Helianthus annuus (common sunflower): 110885214
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Entry
110885214 CDS
T05101
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110885214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
han03041
]
110885214
03009 Ribosome biogenesis [BR:
han03009
]
110885214
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110885214
Spliceosome [BR:
han03041
]
Complex A
U1 snRNP components
U1 related factors
110885214
Complex B
110885214
Ribosome biogenesis [BR:
han03009
]
Eukaryotic type
Pre-60S particles
Helicases
110885214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
110885214
NCBI-ProteinID:
XP_021988593
LinkDB
All DBs
Position
9:complement(178859826..178864790)
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AA seq
682 aa
AA seq
DB search
MNHYDDRVVDAGSYHQRRSVFMGLPPTAGLPAVGAAPNYGPGGLATFRGPPPVLPHLASA
GRGVGNGYPPFEPGVGGAFNIGVGGGGGGRGFGGRGGGRGGGGGGRMSNAGHDGGRGRGG
RSFDSGGRGGSRGGGGRGFDRGQRGGGRDGGRGFSSGGRGGGRGFSDGGRGGGRGFSGGG
RGGGRGFDGGRGGGRGGRGGGSKGDLDSIALPKQDFGNLVPFEKNFYIECRAVSDMTDHE
VAMYRGRREITVEGHDVPKPVRMFHEAGFPGYCLEVISRLGFSEPTPIQSQGWPMALKGR
DLIGIAETGSGKTLSYLLPAIVHVTAQPPLAQGDGPVVLVLAPTRELAVQIQQEAGKFGS
QSRIRSTCIYGGAPKGPQIRDLQGGVEIVIGTPGRLIDMLEAQHTNLKRVTYLVLDEADR
MLDMGFEPQIRKIISQIRPDRQTLYWSATWPKEVESLARQFLSNPYKVIIGSPVLKANQS
INQIVEVVTDLEKYNRLIKLLKEMMDGNRILIFVETKKGCDQVTRQLRMDGWPALSIHGD
KSQDERDWVLAEFKSGRSLIMTATDVAARGLDVKGIKCVINYDFPTSLEDYVHRIGRTGR
AGAKGIAVTFFTHSNAKHARELVKILQEAGQVVPVALSSMTRTMGPGAGSGGSFRSRGRG
GFGNRGGMSGSNTVPLGSNAHW
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgaatcattacgacgacagagttgtggacgccggttcttaccatcagcgtcgaagtgtt
tttatgggattaccgcctacagcgggactccctgcggtgggtgctgctccgaactatggc
cccggtggactggctacattcagaggtcctccgccggtactgcctcatttggcaagcgct
ggaagaggtgttggaaatggatatcctccatttgaacctggagttggtggagcttttaat
ataggtgtaggtgggggagggggagggaggggatttggtggtagaggtggtggtaggggt
ggtggtggtggtggaagaatgagcaatgcaggacatgatggtggtagaggtagaggaggt
agaagttttgattcgggtggtcgtggtggaagcagaggtggcggaggtaggggttttgac
agagggcagcgcggtggtgggcgtgatggaggtagagggtttagcagcggtgggcgaggt
ggagggagagggtttagcgatggtggacgaggtggagggagagggtttagtggtggtgga
cgaggtggagggagagggtttgatggtgggcgtgggggtggaagaggaggaagaggtggt
ggctcaaaaggagatttggatagtatagctctaccaaaacaggattttggaaacttggtg
ccatttgagaagaacttctacatcgagtgtcgtgctgtaagtgacatgacggaccacgag
gtggcaatgtatcgtggtaggagggaaattaccgttgaaggtcatgacgtcccgaagccg
gtcagaatgtttcacgaggcaggttttcctggctattgtctagaagtcatttctagactg
ggatttagtgagccaacaccaattcagtcacaaggatggcctatggcgttaaagggaaga
gatttaatcgggattgccgagactggttctggcaagactttgtcatatttgctgcctgca
attgttcacgttaccgcacaacctccattggctcaaggagatggtccagttgtgctagta
ttagctcctactcgagaactggctgtacaaattcaacaagaagctggaaaattcgggtca
caatctagaataagaagcacttgcatctacggtggtgctcctaagggaccacaaattcgt
gatcttcaaggaggggttgaaatcgttattggcacacctggtcggttaatcgatatgtta
gaagcccagcatacaaacttgaaaagagtgacttatcttgtcttggacgaagctgatcga
atgttagatatggggtttgaaccacaaatcaggaaaattatatcccaaatcagacccgat
agacaaacactttattggagtgcaacatggcctaaagaggttgagagtttagcaagacag
tttctaagcaatccatacaaggttatcattggatcccctgttctgaaagcaaatcagtca
ataaatcagattgttgaagttgtaacagatttggaaaagtataatcggctgatcaaactg
ctgaaagaaatgatggacggaaacagaattcttatatttgtggaaacaaagaaaggatgt
gatcaagttacacgacaacttagaatggatggatggcccgcactatccattcatggtgat
aaaagccaagatgaacgggactgggttttggcagagtttaaaagtggcaggagtcttata
atgacagcaactgacgttgctgcccgtggtcttgatgtgaagggcataaaatgcgtcatc
aattatgattttccaacaagcctcgaggattatgtccataggatagggcgaactggtcgt
gcaggagccaaggggattgctgttacattttttacccattcaaatgctaagcatgctaga
gagcttgttaagattcttcaagaggctggtcaagttgttcctgttgcattgtcgtctatg
acccggaccatgggtcctggagcaggttctggtgggagctttaggtcgagaggtagaggt
gggtttgggaatcgaggtgggatgtcgggatctaatactgttcctcttggttccaacgct
cattggtag
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