Helianthus annuus (common sunflower): 110885612
Help
Entry
110885612 CDS
T05101
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110885612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110885612
03041 Spliceosome [BR:
han03041
]
110885612
03009 Ribosome biogenesis [BR:
han03009
]
110885612
03016 Transfer RNA biogenesis [BR:
han03016
]
110885612
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110885612
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110885612
Spliceosome [BR:
han03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110885612
Complex C
U4/U6.U5 tri-SnRNP related factors
110885612
Ribosome biogenesis [BR:
han03009
]
Eukaryotic type
Pre-60S particles
Helicases
110885612
Transfer RNA biogenesis [BR:
han03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110885612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
110885612
NCBI-ProteinID:
XP_021989009
LinkDB
All DBs
Position
10:109264916..109273590
Genome browser
AA seq
993 aa
AA seq
DB search
MGSVKRKSVDEGPSNYTSPPHKQHKDNDNGLTETTEEGVACVHDVSYPENYVTVPRRSNT
DQDSKPAKEFPFTLDPFQSEAINCLNVGESVMVSAHTSAGKTVVASYAIAMSLRNKQRVI
YTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSELTREV
AWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWVAKVHQQPCHI
VYTDYRPTPLQHYLFPTGGDGLYLVVDEKGKFREDSFQKALNALVPVNEKKDSGKFQKGL
VNGRAGEDSDIFKMVKMIIQRQYDPVIIFSFSKRECEFLAMQMAKMDLNDDDEKVNTETI
FWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE
TFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDDRGVCILMVDEKL
EPSTAKMMVKGSADCLNSAFHLSYNMLLNQLRCEDGDPENLLRNSFYQFQADRAIPDLER
QMKGLQEERDSIHIEEEDSLENYYSLLEQYKSLKKDVRDIIFSPRYCLPFLQPGRLVCVR
CTSSDESTPTFSVEDHVTWGVIVNFQKVKSLSEDDVDKSPEDANYTVDVLTRCTVSKDEL
SKKTIKIIPLKEPGEPAVVSVPISQIDNLSSVRLIIAKDLLPLENRENTLKKVSEVLSRF
SKQGIPLLDPEEDMKVQSGSYRKAVRRIEALENLFEKHEVAKSPLIEQKLKVLHKKKQIT
AQIKSIKKSMRSSSALAFKDELKARKRVLRRLGYVTRDDVVELKGKVACEISSADELVLT
ELMFNGVLKDIKIEEMVSLLSCFVWQEKLQDAQKPREELDMLFTQLQDTARRVAKVQLEC
KVEIDVEGFVSSFRPDIMEAVYSWAKGSKFYEIMEITQVFEGSLIRGIRRMEEILQQLIL
AAKSIGEVELEAKFEEAVSKIKRDIVFAASLYL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgggatcagtcaagagaaagtctgtagacgaaggtccttcaaattacacgtccccaccg
cacaaacaacacaaagacaacgacaacggattaacagaaaccaccgaagagggggttgcg
tgtgttcatgacgtatcttacccggaaaactacgtcactgttccccggcggtctaatacc
gaccaagattcaaaacccgcgaaggaatttccatttactctcgacccttttcagtctgaa
gcaattaattgtctgaatgttggagaatctgtcatggtatcggcacatacttcagccggg
aaaactgttgtggcatcatatgctattgcgatgtcactgagaaataagcagagagtaata
tacacatctccgataaaggcattgagtaatcaaaagtatagggagtttaaagaagagttt
tccgacgtgggtttgatgaccggagatgttactattgagcccaatgcttcttgtttggtg
atgaccacagaaatctggcgtagtatgcagtacaaaggatcagagctcacaagggaggtg
gcatggatcattttcgacgaggtacattatatgcgcgatagagaaagaggggtagtttgg
gaagaaagcattgttatggcccccaaaaatgctcgtttcgtcttcttatctgctacagta
ccaaacgcgaaggagtttgccgattgggttgcaaaggttcatcaacaaccatgtcatatt
gtttatacagattatcggccaacgccgcttcagcattatctttttccgactggtggtgat
ggattatacttggtggtggatgaaaagggaaaatttcgtgaggatagttttcaaaaagcg
ttaaacgctcttgttcccgttaatgagaaaaaagatagtgggaaatttcagaagggtttg
gtcaatggtagggctggtgaagacagtgacatattcaagatggtgaaaatgattattcaa
cgacaatatgatcccgtcataatctttagttttagcaaaagggaatgtgaattccttgca
atgcagatggcgaaaatggatttaaatgacgatgacgagaaagtgaacactgaaaccatc
ttttggagtgctatggacatgttatcagatgatgataagaagctaccccaggtgtcgaat
atgcttcccctcttgaagcgtggaataggcgtgcatcattccgggttgctccccatactg
aaagaagttattgaaatactattccaagaaggtctaattaagtgcttgtttgccacagag
acatttagcataggtctcaatatgcctgcaaaaactgttgttttttcaaatgttcgaaag
tttgacggcgataaattcagatggctatcgagtggtgaatatattcaaatgagtggtcga
gcgggtcgtagaggaatcgatgatcgtggggtctgcattcttatggttgatgaaaaatta
gaaccttccaccgccaaaatgatggtcaaagggagtgctgactgtttgaacagtgcattc
catttaagctacaacatgctcttgaatcaattgagatgcgaagacggtgatcccgaaaat
ttgcttcgtaattcattctatcaatttcaagctgaccgagccatccctgatcttgagaga
caaatgaaaggtcttcaggaggaacgagactcgattcacattgaagaagaggatagttta
gaaaattattactctttgttggagcaatataaaagcttaaagaaggatgtgcgtgacatc
atcttttctcctagatattgcttgccgtttttgcaacctggcaggcttgtatgtgttcgt
tgcacgagtagtgacgaaagtactcccactttttccgttgaggatcatgtcacatggggt
gttatagtcaactttcagaaagtcaagtctctttcagaagatgacgtggacaaaagcccg
gaagatgcaaactatacagtggatgttcttacaagatgtaccgtatctaaagatgaactt
tctaagaagacaattaagattattccactaaaggagcccggggaaccggctgttgtttct
gttcctatttctcagatagataacttgagtagtgtgaggctcataatagcaaaggatctt
ttaccactggaaaatcgggaaaatacgttaaaaaaggtgtcggaagttctctcgagattt
tccaaacaaggaatacccctcttggaccctgaagaagacatgaaggtccaaagtgggtcg
tataggaaggcggtccgcaggattgaggctttagagaacctgtttgagaaacatgaagtt
gcaaaatctccactcattgagcaaaagttgaaagtcttgcacaagaagaaacaaattact
gctcaaattaaatcgattaagaagtcaatgcggtcttcctcagcacttgcctttaaagat
gagctcaaagcaaggaaaagggttcttcgaagactcggatatgtgactagagacgatgtt
gtggagttgaaggggaaagttgcttgtgaaattagtagcgcagatgaattggtattaacc
gagcttatgtttaatggtgttttaaaagacataaaaatagaagaaatggtatctcttttg
tcttgtttcgtctggcaagaaaagcttcaggatgctcaaaagcccagggaagaactcgac
atgctctttacacaattgcaagataccgcacgaagagtagctaaagttcaactagagtgc
aaggttgaaattgatgtagagggttttgtgagttcgtttcggcctgatattatggaggct
gtttattcatgggcaaaagggtcgaaattttatgagataatggaaataacacaggtattt
gaaggcagtttgatcagaggtatcaggagaatggaagaaattctacagcagttaatatta
gcagcaaaatcgattggggaagttgaacttgaagccaaatttgaagaggcggtttcgaag
atcaagagagatattgtgtttgcagcctcattatacttgtag
DBGET
integrated database retrieval system
