Helianthus annuus (common sunflower): 110885988
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Entry
110885988 CDS
T05101
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han04120
Ubiquitin mediated proteolysis
han04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110885988
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
110885988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
han04121
]
110885988
Enzymes [BR:
han01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110885988
Ubiquitin system [BR:
han04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110885988
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
110885988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_DCAF4
WD40_MABP1-WDR62_2nd
zf-C3HC4_2
Beta-prop_TEP1_C
EIF3I
Beta-prop_EML
Beta-prop_HPS5
zf-C3HC4
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_like
WD40_MABP1-WDR62_1st
zf-C3HC4_3
zf-RING_2
WD40_RFWD3
Beta-prop_SPT8
zf-RING_UBOX
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
zf-RING_5
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
zf-C3HC4_4
U-box
YbfN
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
110885988
NCBI-ProteinID:
XP_021989424
LinkDB
All DBs
Position
10:complement(147579265..147584809)
Genome browser
AA seq
675 aa
AA seq
DB search
MENESAGDLVPAVKPELQIASSDLFPHDSGAEKTVEAPQSETTDKDMLCPICMQIIKDAF
LTSCGHSFCYMCIITHLDNRSDCPCCASSLTTNQIYPNFLLDKLLKKTSASQVSKSASPL
EQFRLALLQGYQVSVKEVDTLLSLLSEKKRKLEQEEAERNMQNLIDFLHFLRKKKIDELN
EVQTDIQYIKEDASLVERRRMELYRARDKYLTKMQKQAGDLQEPKSWFSSSINKDNNDLK
YASAKTHGGVPTGNFHHKDVDGKSQASSIVAQAREASSVLTSQHTSQSSLAVIRKKRVQS
QFNDLQQCYLQKRRQLVNPSQNNDKKDADDMQREGYSSALSDFQSVLSTFTQYSRLRVIA
ELRHGELYHSANIVSSIEFDRDDELFATADVSRRIKVFNFSTIVNEPPEAHCPVVEIPTR
SKLSCLSWNKHTKNHIASSDYEGTVFVWDVNTQQSVMEYEEHEKRVWSVDFSRIEPSMLV
SGSDDCKVKIWCTRQESSAINIDMKANICCVKYNPGSSNHIAVGSVDHHIHYYDLRNTSH
PLHVFSGHQKTVSYVKFLSNDELASASTDSTLRLWDVKHHLPVRTFRGHTNEKNFVGLSV
NNDFLACGSETNEVYSYHKAISKPLTWHRFGTPNVDDSDEEPGSYFISAVCWKNDSPTLL
AANSLGTIKVLVLAT
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgaatcggccggtgatttagttccggcagtaaaaccggaactgcaaatagcc
tcttccgatctcttcccacacgactccggcgccgagaaaacggttgaagcaccacaatcg
gagacgactgataaggatatgttgtgtccgatatgtatgcagattattaaggatgcgttc
ctgacgtcatgtggacatagcttctgttacatgtgtatcatcactcaccttgataacagg
agtgattgcccttgttgtgcttcttctctcacaacgaaccagatttaccctaattttcta
ctggataagctattaaagaagacttccgcttcccaagtatcaaaaagtgcctccccgtta
gagcaatttcgtctggcattactccagggttaccaagtctcagtgaaggaagtggataca
ttattatcactgctttctgagaagaaacggaagttggagcaggaagaagctgagagaaat
atgcaaaatcttattgattttttgcatttcttaaggaaaaagaaaatcgatgaactcaat
gaggtgcaaactgatatccagtatatcaaagaggatgctagcttggtagagagacgtagg
atggagctgtatagagcaagggataaatatttaacgaaaatgcaaaagcaagctggtgat
ttacaggaaccgaaatcttggttttcttcatcaataaacaaagacaataatgaccttaag
tatgcatccgcgaaaacacatggtggagttcctactggtaacttccaccacaaggatgta
gatggaaaatctcaagcttcctcaattgtagcacaagcgagagaagcttccagtgtattg
acttcacaacatacaagccaatcaagtcttgctgttatacgtaaaaaacgtgttcaatct
cagtttaatgacctgcaacaatgttacttacaaaaacgccgtcaactagtgaatccatca
cagaacaatgataaaaaggatgctgatgacatgcaacgggaaggctatagttcagcgttg
tctgattttcaatctgtgctgtctacatttacacaatacagtcgactaagggtgattgcg
gaacttaggcatggggagctctatcattcagccaacattgtatctagcattgagtttgat
cgtgatgatgaactttttgctactgctgacgtttcgaggcgtataaaggtttttaacttc
tcaacgattgttaatgaaccccctgaagcacactgtcctgtagttgagattccgacacga
tctaagcttagttgcttgagctggaacaaacatacaaaaaaccatatagctagtagtgat
tatgaagggacagtatttgtctgggatgtgaatactcaacagagtgtgatggagtatgaa
gagcatgaaaaacgggtatggagtgttgatttttcacgtatagaaccgtcaatgcttgta
tctggtagtgacgattgtaaggtgaaaatttggtgcacaaggcaagaatcaagtgctatc
aacatcgatatgaaggcaaacatatgttgtgttaagtacaatcctggatccagcaatcac
attgcggttggctcagtggaccatcatatacattattatgatttaaggaacaccagccat
cctcttcatgtctttagtggccaccaaaaaactgtttcatatgttaagtttctgtccaat
gatgagctggcatctgcatctacagacagcactttacgcttatgggacgtgaaacatcat
cttcctgttcgtaccttcagaggtcacacaaatgagaagaactttgttggtctctcagta
aacaatgattttcttgcttgtggcagtgaaacaaatgaagtatacagttatcataaggca
atatcaaagcctctgacatggcatagatttggtacacctaacgtggacgatagtgatgag
gaaccaggatcttacttcattagtgctgtatgctggaagaacgacagtcccacattgtta
gctgctaacagtctgggcaccatcaaagttttagttcttgcaacatag
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