Helianthus annuus (common sunflower): 110886229
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Entry
110886229 CDS
T05101
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110886229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110886229
03041 Spliceosome [BR:
han03041
]
110886229
03009 Ribosome biogenesis [BR:
han03009
]
110886229
03016 Transfer RNA biogenesis [BR:
han03016
]
110886229
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110886229
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110886229
Spliceosome [BR:
han03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110886229
Complex C
U4/U6.U5 tri-SnRNP related factors
110886229
Ribosome biogenesis [BR:
han03009
]
Eukaryotic type
Pre-60S particles
Helicases
110886229
Transfer RNA biogenesis [BR:
han03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110886229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
110886229
NCBI-ProteinID:
XP_021989696
LinkDB
All DBs
Position
10:complement(160590488..160599058)
Genome browser
AA seq
997 aa
AA seq
DB search
MENSSSAEKRKLPQESSEVVDAEIKNQESASKKQRVVARTCVHEVAVPNGYISSKDETIH
GSLSDPVYNGKMAKTYPFVLDPFQQISVSCLERKESVLVSAHTSAGKTAVAEYAIAMAFR
DKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGS
EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIH
KQPCHVVYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFREDNFLKLQDTFTKQKQIGGNL
SGNNKSSGRIAKAGNASGGGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMAMTKLD
FNSPEEKEVVEQVFKNAILCLSEEDRNLPAIELMLPLLQRGIAVHHSGLLPIIKELVELL
FQEGLVKALFATETFAMGLNMPAKTVVFTSVRKWDGDSHRYVGSGEYIQMSGRAGRRGKD
ERGICIIMIDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMRRAEGQFTAEHVIKNS
FHQFQYEKTLPDIGKKVAKLEDEVAKLDASGEADVAEYHKLKLEITELEKKMMTELTKPE
RALLFLLPGRLVKVREGGTDWGWGVVVNVVKKPPPQQGSLPATSRGSSYIVDTLLHCSIS
SSESGSRPKPCPPRYGEKGEMHVVPVQLPLISALSKLRITIPTDLRPLEARQNILLAVQE
LEKRFPQGLPKLNPVKDMGIEEPEFVDLVNQIEKLEQQLLSHPLNKSQDENQIECFKRKA
EANHEIQQLKTKMRDSQLQKFRDELKNRSRVLKKLGHIDSEGIVQVKGRAACLIDTGDEL
LVTELMFNGTFNDLDHHQIAALASCFIPGDKSSEQIHLRSELAKPLQQLQDSARRIAEIQ
HECKLEVNVDEYVEAVVRPFLMDVIYCWSKGASFSEVIQMTDIFEGSIIRLARRLDEFLN
QLRAAAHAVGEAGLEEKFGAASESLRRGIMFANSLYL
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcttcaagtgctgaaaaacggaagctaccacaagaaagctcagaggtggtg
gatgctgaaatcaagaaccaagaatcggcatcaaagaagcaacgtgtggttgcaagaact
tgtgttcatgaggtagctgttccaaacgggtatatttccagtaaagacgaaactatccat
gggtcgttatcagatccagtttataatggaaagatggcgaaaacctacccgtttgttctc
gacccgtttcaacaaatatctgtgtcatgtttggagcgtaaagaatcagttttagtatca
gcacatacgtcagccgggaaaaccgctgttgcagagtatgcaattgctatggcttttaga
gacaagcagagggtcatctacacatctccgttaaaagctttaagcaatcagaaataccga
gaactaagtcaagagttttctgatgtcgggttgatgacgggtgatgtcacactctctcca
aacgcaagttgcttagttatgacaactgagattcttaggggaatgctttatcgaggatcc
gaggttttgaaagaagtcgcatgggttatatttgacgagattcattacatgaaggatcgt
gaaagaggggtagtttgggaagaaagtataatctttttacctccggctattaagatggtt
tttctttctgcaacaatgtcaaatgctaccgaatttgctgaatggatatgcaatatacat
aaacaaccgtgtcatgtggtgtatactgattttagaccgacacctttgcagcattatgtg
tttcccatgggtggatcgggattgtatcttgtagtcgatgaaaatgagcagtttagagag
gataatttcttgaaattgcaagacactttcactaagcagaagcaaattggcggaaatcta
agtggaaacaataagtcgagtgggagaatcgcgaaagctggaaatgcttctggtggtggt
ggatctgatatttacaaaattgtcaagatgataatggaaagaaaattccaacctgttata
atcttcagctttagcagaagagaatgcgagcaacatgcaatggcaatgaccaaacttgat
ttcaatagcccagaagaaaaagaagtggtggagcaggttttcaaaaacgctatattatgc
ctgagtgaagaagatagaaacctcccggcaattgagttaatgttgccattattgcaacgg
ggcattgctgttcatcattctggccttcttcctattatcaaagaacttgtagaactttta
tttcaagaaggccttgtaaaagcactttttgcaacagaaacatttgctatggggttgaac
atgcctgcaaaaacggttgtttttactagtgttaggaaatgggatggtgatagccatcgg
tatgtaggatctggagagtacattcagatgagtgggagagctggacgtcgtggcaaagat
gaacgtggtatttgtatcataatgattgatgaacagatggagatgaatactctcaaggac
atggtgctagggaaaccagcgccactagtcagtactttcaggctgagttactactcaata
ttaaacttaatgagacgggccgagggccaatttacagcagaacatgttataaaaaattct
tttcaccagtttcagtatgaaaagaccttacctgatattgggaaaaaggttgccaagcta
gaagatgaagtagctaagctcgatgcttctggagaggctgatgttgctgaatatcataag
cttaaacttgaaatcaccgaactagagaagaagatgatgacagaactaacaaaacccgaa
agagctctattatttcttctacctggtagactggttaaggttagagaaggtggaacagac
tgggggtggggagtggtggttaatgtggttaaaaaaccaccgccacaacaaggctcgtta
cccgctacatcacgtggtagtagctatatagtagacactttgcttcattgttctattagt
tcaagcgaaagtggttctcgccctaaaccatgcccaccgcgttatggtgaaaagggtgaa
atgcatgtggttcctgttcagttacctttgatatcagcattgagcaagcttagaataaca
attcctaccgatcttcgtccattggaagcacgccagaatatattattggcagttcaagag
cttgaaaagaggtttccacaaggtcttccaaaactgaatcccgttaaggatatgggcatc
gaagaacctgaatttgtcgacctggtaaatcagatcgagaaactcgaacagcagttgctt
tctcatccgttaaacaagtctcaagatgaaaaccagatcgaatgtttcaagaggaaagca
gaagcaaatcatgagattcaacaattgaagacaaaaatgcgcgattcacagcttcaaaaa
tttcgcgatgagcttaaaaaccgatcacgggttttaaagaaacttggacatattgattct
gaagggatagtgcaagtgaagggtcgggcagcatgcttaattgacacaggagatgaactc
ttagtaactgaattaatgtttaatggtacctttaatgacctggatcatcatcaaattgcg
gcactcgcaagttgctttattccaggagacaaatcaagtgaacaaatacatctaagatcg
gaacttgcgaaaccactacagcagcttcaagatagtgcacgaaggatagcggagatacaa
catgaatgcaaattggaagttaatgtggatgagtacgtggaagcagtagttagaccattc
ttgatggatgttatatattgttggtcaaaaggagcatctttttcagaagttatacaaatg
actgatatctttgaggggagtatcataagactcgctagaaggcttgatgagtttctaaat
cagttacgtgctgctgctcatgctgttggagaagcgggcttagaggaaaagtttggtgca
gccagtgaaagcctacgccgaggtattatgtttgcaaattctttgtatttgtga
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