Helianthus annuus (common sunflower): 110890141
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Entry
110890141 CDS
T05101
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110890141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110890141
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110890141
mRNA degradation factors
5'-3' decay
Decapping complex
110890141
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
110890141
NCBI-ProteinID:
XP_021993401
LinkDB
All DBs
Position
11:complement(43180917..43187311)
Genome browser
AA seq
806 aa
AA seq
DB search
MERFGGGGGDTLQLDSNSSGGAVFDASQYAFFGNEVLEEIELGGLEDDGDLSEAKFEDDE
HLLEQEEGVFPGIDDLSTTFLKLNKDDAMGPSVGVFGDRGSRETSSAADWAQGGDHTNWV
LDQDSFEAERNQQQTNKWSNSSFPLQDPSMLLHRTSSYESNQYLHRTSSYPEQHQQHNLN
QHLIDESKNLHRTSSYPEQQQHHHLGQDLHFSSEPVPVPKSSFISHPPPGGGGSPQFSPN
HQSRYLNPPYHPTGPQTGPSFSGISPQLQMGGMPHGSPFGGNFNLPQFRPSAPAVNNRLQ
NQFGGKLPDLSNGMMQQHFTHNNSIPPQQHRMHQQFQPPFGGHLSGLQPLMNHHTPLMNN
FEPLGIGSRDLRPKSLAKGRPGQGPRGFDTSGWPQFKSKYMTSDEIENILRMQLAATHSN
DPYVDDYYHQACLANKSSGAKLRHHFCPTQLRDCPPRARAANEPHAFLQVDALGRISFSS
IRRPRPLLEVDSPKSTTSGITDQKMLDKPLEQEPMLAARVTIEDGICLLLDVDDIDRFLQ
FNQLQDGGAQLRQRRQVLLEGLATSLQLVDPFGKNGQTDELAQTDDFIFLRLVSLSKGWK
LLASYLKHLDPGSELTRLVCMAIFRHLRFLFGIVPVDPQAAETINKLVITVSSSVRGMEL
RSLGTCLASVVCSPEQPPLHPLGSPAGDGASVVLKSVLERATELLTDPNAATSCSPANRA
FWQASFDAFFGLLTKYCVSKYESVVQSLLSQGCGPSEMAVMGSDAAKAISREMPIELLRA
SLPHTNENQRKVLLDFAQRSMPVHST
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggagagattcggaggcggtggtggtgatactctacaacttgattcgaattcatcaggt
ggtgctgtatttgatgcgtcacagtatgcgttctttggtaatgaagtgcttgaagaaatt
gagttgggagggctggaggatgacggagatctttcagaagctaagtttgaggatgatgag
catctgttggagcaggaagagggtgtgtttccaggaattgacgatctttcgacaacattt
ttgaagctcaacaaagatgatgccatgggaccaagcgttggagtatttggtgaccgagga
tctcgagaaacttcttctgcagctgactgggcacagggaggagaccacaccaactgggtg
cttgatcaagatagttttgaagcagaaaggaatcaacaacaaaccaataaatggtcaaac
tcttcatttccgcttcaagatccatcaatgcttcttcacagaacatcatcctacgaatca
aaccaatatcttcacagaacatcatcgtatcctgagcaacatcagcaacacaaccttaac
caacacctgatagatgaatcaaagaatcttcatagaacatcatcttaccctgaacaacag
caacaccaccaccttggtcaggatttgcatttctctagtgaaccggttcctgttcctaaa
tcatcctttatctcacaccctcctcctggtggcggtggatccccccaattttcaccaaat
catcaatcacgctatcttaaccctccgtatcaccccaccggaccccagacaggaccatcg
ttttcgggcatatctccacagcttcagatgggtgggatgccacacggatcaccatttggt
gggaattttaatctgcctcagtttcgtccttctgctccagctgtcaataatcggctacaa
aaccaatttggtgggaagttgcctgatctttcaaatggtatgatgcaacaacatttcact
cacaataacagtataccgcctcaacaacacaggatgcaccaacaatttcagccgcctttt
ggtggtcatttatccgggttgcagccactaatgaaccaccatacacctctaatgaacaat
tttgaaccccttgggattggttcaagagatttgagacctaagtcattggccaaaggtaga
ccgggtcagggaccgaggggctttgacaccagtggatggccacagttcaaatcgaaatac
atgacatctgatgagattgaaaatattctcagaatgcaacttgctgctacacacagtaat
gatccttatgtagacgattactatcaccaagcttgtttagcaaacaaatctagcggtgca
aaattaagacaccatttttgccccacccagttaagggactgcccacccagagcccgtgct
gcgaatgaaccacatgcatttctccaagtcgatgctttgggccgaatttctttttcttcc
atacgccgtcctcgccctcttcttgaagttgactcaccaaagtcgactactagtgggatc
actgatcagaaaatgttggacaaacctttggaacaagaacctatgctcgcagctagagtc
acaattgaagacggtatttgtcttcttctagatgttgatgatattgaccgttttctacag
ttcaatcagctccaggatggtggggcccagttacggcaaaggcggcaagtgcttctggaa
ggtttagcaacgtcgcttcaacttgttgacccgtttggcaagaacggtcaaacggatgag
ttggctcaaacggacgatttcatctttttacggctggtttccctttcaaagggatggaag
cttctcgcaagttaccttaaacatcttgacccgggaagcgagttgactcgtttggtttgc
atggcaattttccgccatttaaggtttttatttggaattgttccggttgatccacaagca
gcagaaacgattaataaacttgtaattaccgtttcgtcctcggttcgtgggatggagctt
agatcactcggtacctgtcttgcatctgttgtttgttctccagagcagcccccacttcat
cctcttggaagtcctgcgggggatggggcttctgttgtgttaaaatctgtactagaaaga
gcaaccgagcttttaaccgacccaaatgctgccactagctgcagcccagcaaatcgggcc
ttttggcaggcatcttttgacgctttttttgggcttctcactaaatactgtgttagtaaa
tatgaaagtgttgtccagtcgttgctgagtcaggggtgtggtccatctgagatggcggtt
atggggtcagatgctgcaaaagctattagtcgggaaatgcccattgaactcttacgggcc
agccttcctcatacaaacgaaaaccagaggaaggtgttacttgattttgctcagcggtcc
atgcctgttcatagcacttga
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