Helianthus annuus (common sunflower): 110890370
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Entry
110890370 CDS
T05101
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52A isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110890370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
han03041
]
110890370
03009 Ribosome biogenesis [BR:
han03009
]
110890370
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110890370
Spliceosome [BR:
han03041
]
Complex A
U1 snRNP components
U1 related factors
110890370
Complex B
110890370
Ribosome biogenesis [BR:
han03009
]
Eukaryotic type
Pre-60S particles
Helicases
110890370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
SWI2_SNF2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110890370
NCBI-ProteinID:
XP_021993661
LinkDB
All DBs
Position
11:96862799..96874143
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AA seq
552 aa
AA seq
DB search
MSYVPPHLRKSVAATTTTTTVTATILNTTTTTTANHNLNSKSVHNAATRRSSSNNHIQPS
RALAVPNAVFPRWKPSERVLRLKPEQIEEVRLRLNVDVTVTPDSPPAPAPIESFTDMCLD
SSIMKDIAIHEYTTPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCIAQPSV
RRGDGPLALVLAPTRELAQQIEKEVKAFSQSLESFRTAIVVGGTNIADQRSELRTGVEIV
VATPGRFIDHLQQGNTSLTRISYVVLDEADRMLDMGFEPQIREVMHNLPEKHQTLLFSAT
MPVEIEALAQEYLTNPVQVKVGKVSSPTENVSQNLEKITENEKIDQLLSLLVEEAVLAEK
LGHQFPLTIVFVERKTRCDEVAEALVAQGLNAVALHGGRTQNEREGALRDFRHGPTNILV
ATDVASRGLDVTGVAHVVNLDLPKTMEDYVHRIGRTGRAGSTGRATSFYTDRDMFLVSQI
RKAIADVQSGNTVAFATGKVARRKEREAAAAHKEAQSKLPPTSINVDDKYKYMIAPAAML
RKEGSADDAWDD
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacgtacctccacacctccgtaagtccgtcgccgccaccaccaccaccaccacc
gtcaccgccactatcctcaacaccaccaccaccaccaccgcaaaccacaacctcaactct
aaatccgttcacaatgcagctactcgccggagctcatccaacaaccacatccaaccgtcg
cgagcactcgccgtacctaatgccgtgtttccgcgttggaagccttccgaacgcgttcta
cgccttaaaccggaacagatagaagaggtcagattacgactcaatgttgatgttactgtg
actcctgattctcctcccgcacctgcaccaatcgaatcgtttacagacatgtgcctggac
tcaagcatcatgaaggatattgcgattcatgaatacacgacacctacctctattcaggca
caggcgatgcctgttgcactaagtggaagggatcttttaggctgtgcagaaacaggcagt
ggtaaaactgctgctttcacaatacccatgatacagcattgcatagctcagccttctgtt
agacgtggagatggtcctttggcactagtgctggctcccactagagagcttgcacaacag
atagagaaagaggtgaaggcgttcagccaatcgttggagtccttcagaactgcaatcgtt
gtgggtggaacaaacattgcagaccagagatctgagcttcggacgggagttgaaattgtg
gttgctacacctggaagatttatcgatcatttacaacaggggaacacatctctcacacgg
atttcatatgtcgttctggatgaagcagatagaatgcttgatatgggttttgaacctcaa
atacgagaggtgatgcataatcttccagaaaaacatcaaacactattgtttagtgcaact
atgccagtggagattgaagcattagcacaggaatatctaacgaatccagtacaagtgaag
gttgggaaagtgagtagcccgacagagaacgtgtcccaaaacttggagaaaattaccgaa
aatgaaaagattgatcaactactatctttgcttgttgaggaagctgtactagctgaaaaa
ttaggccaccaatttcctttgactattgtatttgtggaacgaaagacaaggtgtgatgaa
gttgcagaagctttggtagctcagggtttgaatgctgttgctcttcatggaggccgaact
cagaacgaaagagaaggtgccctgcgtgattttagacacgggcccactaatatcttggtt
gctactgatgttgcatctcgaggcctagatgttacaggagttgctcatgtagtgaacctg
gaccttccaaagacaatggaggactacgtgcaccgaatcggaaggacaggtcgtgcagga
tcaacgggccgggctacttcattctatacagatcgtgatatgttccttgtatcacaaata
aggaaagcaatagcagatgtccaatctgggaacacagtggctttcgccactggcaaggtt
gctagaaggaaggagagggaagcagctgctgcacacaaagaagcacaatcaaagctccca
ccgacatctattaatgtggacgacaagtacaagtacatgattgcacctgctgcaatgcta
agaaaagagggttctgctgatgatgcttgggacgattaa
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