Helianthus annuus (common sunflower): 110890404
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Entry
110890404 CDS
T05101
Name
(RefSeq) zinc finger CCCH domain-containing protein 49
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110890404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
han03041
]
110890404
Spliceosome [BR:
han03041
]
Complex B
Other components
Prp19-related factors
110890404
Complex C
110890404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
RRM_occluded
RRM_3
RRM_YTH1
zf-CCCH_4
zf-CCCH
zf-CCCH_10
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
110890404
NCBI-ProteinID:
XP_021993702
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All DBs
Position
11:59636259..59639861
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AA seq
457 aa
AA seq
DB search
MAHRVLRDHEADGWERSDFPIICESCLGDNPYIRMTKENYGAECKICTRPFTVFMWRPGR
DARYKKTEICQTCSKLKNVCQVCVLDLEYGLPVQVRDTALSISSHDSIPKSDVNREYFAE
EHDRRARAGLDYESSYGKVRPNDTLLKLQRTTPYYQRNRAHICSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGINDPVALKLLNKAGDMPALEPPDDESIRTLYVGGLDARIS
EQDLRDEFYSHGEIESIKMVVQKACAFVTYTTREGAEKAAEELSNKLVVKGLRLKLMWGR
PQVAKDGETGSSVAHGGLLPRAVISHQQYQDVPPPGTSTSQEQQPLPPHMQYFNIPLPPP
QHERTFYPSMDPQRMGAMIPNQAGGGSGGSEQPPQGDSGLQYSAYPPPPLPPQGGDQYYQ
YYQQYYAPPPPEQSYQQYPPPAYPSTVPPTGPTDEEV
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatagggtgttaagagatcatgaagcggatggttgggaacggtctgactttccg
attatatgcgaatcatgcttaggtgacaatccgtacattcgaatgacaaaagagaactat
ggtgcggagtgtaagatctgcaccaggccgtttacggtgttcatgtggagaccaggtcgt
gatgcaagatacaagaaaactgagatttgccaaacttgtagcaagttgaagaatgtttgt
caagtgtgtgttttggatcttgagtatgggttaccggtccaggttcgtgatactgcactt
agtatcagctcacatgattccattccgaagagtgatgtcaaccgggaatacttcgcagag
gaacatgatcgcagggcaagggctggtctagattatgaatcttcatatggtaaggtccgc
cctaatgacacgcttttgaagcttcaaagaacaacaccatactaccagagaaaccgagca
catatttgtagtttttacatcagaggcgaatgtacaagaggtgctgaatgcccgtacaga
catgaaatgcccgtcactggagagctatctcagcagaatatcaaagatcgttattatgga
attaatgatccggtggcattgaaacttttaaacaaagctggtgatatgcccgctttagaa
ccaccagatgatgaaagtatcagaacattgtatgtcggagggcttgatgcgagaatttcc
gagcaggatcttagagacgagttttactcacacggtgaaatcgagtcgataaagatggtg
gtccaaaaggcttgtgcgtttgttacttacacgactagagaaggggcagagaaggcagct
gaagaactctcgaataagctcgtggttaaaggtcttaggttaaaactgatgtggggccga
ccacaagtggcgaaagatggtgaaacgggttcgtcggttgctcatggcggtttattgcct
agggccgttatatcgcaccagcagtatcaggatgttccgccaccggggacctcgaccagt
caggagcagcaaccactgccaccacacatgcagtattttaacattccgctgccaccgcct
cagcatgagaggacgttttatccgtctatggatcctcagaggatgggagcgatgatccca
aaccaggcaggcggtggttcaggtggttcggagcagcccccgcaaggtgattcgggtctg
cagtattctgcttacccaccaccaccactgccacctcaaggcggtgatcaatactatcaa
tactatcaacagtattatgcgccaccgcctcctgaacaatcatatcaacaataccctcca
ccagcttacccctccacagtgcctccaacgggacccaccgatgaggaagtgtag
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