Helianthus annuus (common sunflower): 110891055
Help
Entry
110891055 CDS
T05101
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110891055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110891055
03012 Translation factors [BR:
han03012
]
110891055
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110891055
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110891055
Translation factors [BR:
han03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110891055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
NACHT
AAA_19
Rad17
Motif
Other DBs
NCBI-GeneID:
110891055
NCBI-ProteinID:
XP_021994407
LinkDB
All DBs
Position
11:complement(172479561..172493144)
Genome browser
AA seq
1030 aa
AA seq
DB search
MRVHFISLSPRFITNINIHSYFRTTTFHLSTTSIMSYRPNSQGGRRGGNRGGGRGGGGGR
GGGGGRGGGGRGEQRWWDPVWRAERLKQMQGEVEVFDKNHWWGKMEEMKRGGDVELVIKH
FFSRNDQQTVSDMAYQLGLYFHAYNKGKALVVSKVPLPNYRADLDERHGSAQKEIHMSSE
TERRVENLLDSSTGTQKADSISSTSIQSAKKSPQESDKAAGVSVTETDSVKKALSVELKE
RQDKQKESDIVKAMCSFREKLPAYKMKSEFLKAVAANQVLVVSGETGCGKTTQLPQFILE
EEISSLRGSHCNIICTQPRRISAISVAARISNERGESLGETVGYQIRLESKRSEQTRLLF
CTTGVLLRKLVQDPSLTGISHLLVDEIHERGMNEDFLLIILRDLLPKRPDLRLILMSATI
NADLFSKYFANAPTIHIPGLTFPVQELFLEDVLEKTRYVVKSESDNYQGYSRRRRRQQES
KTDPITEKFEDADIGSVYRSYSASTRQSLEAWSGSEIDLGLVEATIEYICRHEGPGAILV
FLTGWDEISKLLDNVKTNNFISDPTKFLVLPLHGSMPTINQREIFDRPPSGMRKIVLATN
IAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISQASAHQRRGRAGRVQPGVCY
RLYPKMVHDAMLQYQLPEILRTPLQELCLQIKSLQLGAIGSFLAKALQPPDALSVQNAVE
LLKTIGALDDAEELTPLGRHLCTLPVEPNIGKMLLMGSIFQCVNPALTIAAALASRSPFV
LPINRKEEADEAKRFFAGDSCSDHIALLKAFEGWKEAKKSGNEKSFCWENFLSVQTLKMI
SDMRLQFLDLLSDIGFVDKSKGANVYNQYSDDMEMVCAILCAGLYPNVAQCKRRGKRTAL
YTKEVGKVDIHPASVNAGVHIFPLPYLVYSEKVKTSSVYIRDATNISDYALLMFGGNLIP
SKSGDGIEMLDGYLQFSASKSVLGLIKKLRGEVDRLLKRKIEDPKLDVNVEGKGVVAALV
ELLHNQNVHY
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgcgagtgcacttcatttcactttctccgcgtttcatcactaatattaatatccactct
tacttccgaacaaccacttttcatctctccaccacttctatcatgtcttaccgccctaat
tctcaaggcggccgtcgcggcggcaaccgcgggggaggtcgcggcggcggtggtggtcgt
ggaggcggcggtggtcgcggcggaggcggaagaggcgagcaacgatggtgggaccctgtt
tggcgtgctgagcggcttaaacagatgcaaggagaggttgaggttttcgataagaaccac
tggtggggaaaaatggaagaaatgaagaggggaggagatgtggagttggtaataaagcat
ttctttagtagaaatgatcaacagactgtttctgatatggcatatcagctaggcctttat
ttccatgcatataacaaaggcaaggcacttgtggtgagcaaagttccgttaccaaattac
cgagcggatcttgatgagcgtcacggatctgcacaaaaagagatacatatgtcatcagaa
actgagagaagagttgagaatctgttggatagttcaacagggacccaaaaggctgacagt
atttctagtacatctattcagagtgctaaaaaatcaccccaagagtcggataaggcagct
ggcgtatccgttacggagacggatagtgtcaagaaggcacttagtgttgaactcaaagaa
agacaggataaacagaaggagtccgatattgttaaggcaatgtgttcgttcagagaaaag
cttcctgcatacaaaatgaaatccgagttcttaaaagccgttgctgcaaaccaggtatta
gtggtttctggcgaaacagggtgtggtaaaaccacacagcttcctcagtttattttagag
gaagaaatatcgtctttacgtgggtcccactgtaatattatatgtacacaaccccgccgt
atatctgcaatatctgttgctgctcgaatatccaatgaaaggggggaaagccttggtgag
actgtcggttatcagatccgtctggaatcaaaacgatccgagcaaacaagattactgttc
tgcacaacaggagtgttgcttcgaaaactggttcaagacccgagtttgacaggaatcagt
catttgttggttgacgaaattcacgaaagaggaatgaatgaggattttcttttaattatt
ttacgtgatcttctccccaagcgtcccgatttgcggttaatattaatgagtgctactatt
aacgctgacttattctccaaatacttcgcaaatgctccaactattcatatcccgggtttg
acttttcctgtgcaagaactgtttttggaagacgtgctggagaagacccgttatgtagtg
aaatcggagtctgataattatcagggttattcaaggaggaggagaagacaacaggagtcc
aaaactgatcctataacggagaaatttgaggatgctgacatcggttcggtatacagaagc
tacagtgcaagtactagacagtcacttgaagcttggtctggttcagaaatagacttgggc
cttgtagaagcaacaattgagtacatatgtcgtcacgaaggtccaggggcaattctggta
tttcttacaggatgggatgaaatttcaaagctgcttgacaatgtgaaaaccaacaatttt
atcagtgatcctacaaaatttctagtccttcctcttcatggttcaatgcctactatcaac
caacgtgaaattttcgaccgccctccttcaggcatgaggaaaattgtgttagcgacaaat
atcgctgagagtagtataaccatcgatgatgtggtttatgtaattgactgtggaaaagct
aaggagactagttatgacgctttaaacaaactcgcatgtctgctaccatcatggatatca
caagcttcagcacatcagagacgcggtcgtgccggtcgagtacagcctggagtatgttac
agattatatccaaaaatggtccatgatgcaatgctccaatatcagctaccggaaattctt
agaacacctttgcaagaactgtgcttgcagataaaaagcttgcaacttggagccattggg
tccttcctcgctaaggcgcttcagccccccgatgcactctccgtccaaaacgctgttgaa
cttcttaagaccatcggggctctagatgatgcagaagagctcactccacttggacggcat
ttgtgcactctgccagtggagccaaatatcggaaaaatgcttcttatggggtcgattttc
caatgtgttaatccggcgttaacaattgctgctgctcttgcatctcgcagtccatttgtt
cttccaattaaccggaaagaggaagctgatgaagcaaaaagattctttgctggtgattca
tgcagtgaccacatagcccttcttaaagcattcgaagggtggaaggaagcgaaaaagtcc
ggaaatgaaaaatcattttgttgggagaatttcttgtcggttcaaacgttaaaaatgatc
agcgacatgcggcttcagtttcttgatctcttgtctgatattggctttgtagataagtca
aagggtgcaaatgtttataaccaatacagtgatgacatggaaatggtatgtgcaatacta
tgtgccgggctctacccgaatgtggctcaatgcaaaagaagaggaaaacgaacagcactg
tacaccaaagaagtcggaaaagttgatattcatcctgcatcggtgaacgcaggtgtccat
attttccctcttccgtatttggtatatagtgaaaaggtgaaaaccagcagcgtatacatt
cgggacgccacaaatatatcagattatgctttgctaatgtttggtggtaatctaattcca
agcaaaagcggagatggcattgagatgctcgatgggtatcttcagttttctgcatccaag
agtgtgttgggattgataaagaaactaagaggtgaagtagatagattattgaaaaggaag
attgaagaccctaagctcgatgttaatgttgaaggaaaaggagttgttgcagctcttgtt
gagttgctccacaaccaaaatgtccattactaa
DBGET
integrated database retrieval system
