Helianthus annuus (common sunflower): 110894103
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Entry
110894103 CDS
T05101
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110894103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
han03041
]
110894103
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110894103
Spliceosome [BR:
han03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110894103
Complex C
U5 SnRNP specific factors
110894103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
Motif
Other DBs
NCBI-GeneID:
110894103
NCBI-ProteinID:
XP_021996968
LinkDB
All DBs
Position
12:complement(11789102..11796551)
Genome browser
AA seq
2059 aa
AA seq
DB search
MANINHRKRRRVEEESVLTITEEELGVYQPKTKETEAAYETMLSIIQQQLGGQPMSIVTA
AAHEILALLNHNKNHDNNKKKKDIEKLLNPISNAVFHQLVSVATVITDFDNADGDAEDVV
NVGVSVEFDDNDDDEESEVDVMQEEEEEYDGNAVMRMDDGVSEEVNEGMWWLDVQDIDAY
WLQRKISEAYERRIDPQESQKLAEEVLKILEEVNDDDLEVETKLLVCLEFDKFSLVKYLL
RNRVKIVWCTRLARAEDQEQRKQIEERMRDLGPDLVALLEQLHGTRATAIKRRLKEDRDQ
RELVDRDAENAWLNSQRELVDLESISFHQGGLLMANKKCELPSGSYRTNGKGYEEFHVPA
LKRKPLASDEKLVNISAMPNWAQMAFEGMTALNRVQSKVYETALFKSDNILLCAPTGAGK
TNVAMLTILQQIGLHMNEDGSFNHSDYKIVYVAPMKALVAEVVGNLSNRLKRYGVTVMEL
SGDQTLTRQQIDETQIIVTTPEKWDIITRKSGDVTYTRLVKLIVIDEIHLLHDNRGPVLE
SIVARTVRQIETTKEHIRLVGLSATLPNYDDVALFLRVDLKKGLFYFDNSYRPCPLAQQY
IGITVKKPLQRFQLMNDICYEKVISVAGKHQVLIFVHSRNETTKTARAIRDTALANNTLG
IFLKDDSASREILREHTALVKNNDLKDLLPYGLAIHNAGMTRADRELVELLFANGHIQVL
VSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTCGEGII
ITGHSELQYYLSLINQQLPIESQFVSKLADQLNAEIVLGTVQNAKEAVNWLSYTYLYIRM
VRNPTLYGLSPDALKTDRLLEARRADLVHSAATILDKNNLVKYDRKSGYFQATDLGRIAS
YYYITHGTVATYNEHLKPAMSDIELYRLFSLSEEFKYVTVRRDEKMELVKLSDRVPIPIV
ESLEEPSAKINVLLQAYISQLKLEGHSLTSDMVFITQSAGRLMRALFEIVLKRGWAELAE
KALNMCKMVSKRIWSVQTPLRQFHWIKNDVLMKLEKKDLAWERYYDLSSQELGELVHART
LGRDLHKCIHRFPKLILAAHVQPITRSILRVELTITPDFQWEDGIHGYVEPFWVIVEDND
RDAILHSEYFLLKKQYIDEDHTLNFTLPIYEPLPPQYFIKAVSDKWLGSTSVLPVSFSHL
ILPEKYPPPTELLDLQPLPVTALRNPLYEALYPEFTHFNPVQTQVFTVLYNTDDDALIAA
PAGSGKTICAEFSVLRNHQKGPDNVMRAVYIAPVEALAKKRSNEWKKKFGDGLGLRVCEL
TGETTTDLKLLEKGQVIISTPDKWDALSRRWKQHKHVRQVSLFIVDQLHLVGGQNGPVLE
VIVSRMRYIASQGHNIRIVALSTSVANAKDLGEWMGATSHGIFNFSPGVRPNPLEIHIQG
TDIANFETRMQAMSKQTYTTIVRHANNKNPAIVFVPTRKHTRLTAVDLMTYSIAESNYQG
EKIDNKHLFLLQSENELGPFIDRIQEPVLKETLKYGVGYLHEGVAPTDQEIVKTLFETGC
IQVCVISGAMCWGVSLRAHLVVVMGTQYYDCRETAHTDYPITDLLQMMGHTSRPLVDNCG
KCVIFCHGPREKYYKKFLFEPFPVESHLQHHLHDNLNAEVVVKVVANKQDAVDYLTWTFM
YRRLTHNPNYYNLQGASQRHIQEHLSELVENTLNDLESSKCVLINDDFYLSPLNLGLIAS
YYYISYTTIERFSSLISSKTKLKGLLEILAAASEYETLPVRPGEEVLIRRLINHQRFSFE
NVKYGDPHVKAYVLLQAHFSRQLVGGNLGSDQREVVLSAGRLLQAMVDVIASNGWLNLAL
LAMEVSQMLTQGMWERDSVLLQLPHFTKELAKRCQENPGRTVETVFDLVEMEDDERRELL
QMSDTHLMDIAKFCNRYPDIELSYQVLDSDNVKAGEDFTLVVTLERDLEGTTDVGLVDAP
RYPKAKEEGWWVVVGDTESNEVLANRRVYLQRKSRVELDNITAPSEPGEKRLTLYLMCDS
YVGCDQEYSFAVDVKPAAP
NT seq
6180 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatatcaaccatagaaaacgacgtcgtgttgaagaagagagtgttcttacaata
accgaagaagaattaggtgtttaccagccgaaaacaaaggaaactgaagctgcatatgaa
acaatgcttagtatcatccagcaacagttaggtggtcaacctatgagtattgttactgct
gctgcacatgagattctagctcttcttaaccataataagaatcacgacaacaacaagaag
aagaaagatattgagaagctgttgaatcccatctcgaatgcggttttccatcagttggtt
tctgttgcgacggttataacggatttcgacaatgcagatggtgacgctgaagatgtcgtc
aatgttggtgtatcggttgagtttgatgataatgatgatgatgaagagagtgaagttgat
gttatgcaagaagaagaagaagaatatgatgggaatgcggttatgcgaatggatgatgga
gtttcagaagaagttaacgagggaatgtggtggcttgatgtacaggacatcgatgcgtat
tggcttcagaggaagatttccgaggcttatgaacggcggattgatccgcaagagagccag
aagcttgcggaagaggtgttaaagattctcgaagaagttaatgatgatgaccttgaagtt
gaaactaagttactggtgtgtctcgagtttgataagtttagtcttgtgaagtacctttta
aggaaccgtgtgaagattgtgtggtgtacgcggttagctagagccgaagatcaagaacag
aggaaacagattgaagaaaggatgagggatctagggcctgatttggttgcattgttggaa
cagttgcatggcacaagagcgactgcaattaaaagacggttgaaggaagaccgagatcaa
agggaacttgttgatcgtgatgctgaaaacgcttggttaaacagtcaacgagagttggtt
gatctcgagagcatttcgtttcaccaaggtggtcttttaatggcgaataaaaagtgtgag
cttccttcagggtcatataggaccaacggtaaaggatacgaagaatttcacgtaccagca
ttgaagcgcaaaccgcttgcttctgatgaaaagcttgtaaatatttcagcgatgccaaat
tgggcgcaaatggctttcgagggaatgactgcattaaacagggttcagagtaaagtttac
gagactgcgttattcaaatccgacaatatattactgtgtgcgcccactggagccgggaag
accaatgttgctatgctcaccattcttcaacagatcggtttgcatatgaatgaagatggt
tcgtttaaccacagtgattacaagatagtctatgtggcaccaatgaaagctctggtggct
gaagtggtagggaatttgtctaaccgtttgaagcgctatggtgtcacggtgatggagttg
agtggcgaccagactttgaccagacaacagatcgacgaaacgcaaatcatcgtcacgact
cctgagaagtgggatattataactagaaaatcaggagacgttacttatacacgactcgta
aagcttatagttattgatgaaatacatctcttgcatgataaccgagggcctgtacttgaa
agtattgttgcaaggaccgttagacaaattgagacaacaaaggaacatattcggttggtt
gggctatctgccacccttccgaactatgatgacgtggcgttgtttttgcgagttgactta
aagaaaggtctcttttattttgacaatagttacagaccatgcccgcttgctcagcagtat
attggaatcaccgtaaagaagcccttgcagaggtttcaattgatgaatgatatttgttat
gaaaaggtaatcagtgtggcgggaaagcatcaggtgcttatatttgtgcattcaaggaac
gaaacaacaaagactgcacgtgctataagagacactgctcttgctaacaacacgttaggg
atctttttgaaagacgatagtgcaagccgtgagattcttcgtgaacataccgcgcttgtg
aaaaacaatgatcttaaggatcttttgccttatggtttagcgattcataatgcaggaatg
actagggctgaccgtgaattggttgagttgttatttgctaatggacacattcaagtactg
gtttcaactgccactctggcatggggtgtgaacttgccggcccacactgtgattatcaaa
ggaacacagatttataatccggaaaaaggagcatggaccgagcttagcccgctggatgtt
atgcagatgttgggtcgtgcagggcgaccgcaatatgatacctgtggtgaaggaattatt
ataaccggacatagcgagctgcagtattatctttcgctaataaatcaacagcttccaatc
gaaagtcaatttgtttccaagctggctgatcaactgaatgcagaaattgttctaggaact
gttcaaaatgcaaaagaagccgtcaattggcttagttacacgtatttgtacatacgtatg
gtgcggaaccctacactttatggtttatctcctgatgctttgaagacggatcggttactt
gaagctagaagagctgatctggttcattctgcagccacaatacttgacaaaaacaacctg
gtgaagtacgatagaaaaagcggttattttcaagcgactgatttgggtcgaattgcaagt
tactattacataactcacggaacggttgccacgtacaatgagcatttgaagcctgctatg
agtgatattgagctatacagattgttttcactgagtgaggagttcaaatacgtgacagta
agacgggatgaaaaaatggaacttgtaaagctttcggatcgtgttcctattcccatcgtt
gaaagcttagaagaacccagtgcaaagatcaatgtgttacttcaagcatatatttctcag
ctgaagcttgaaggacactctttgacttctgacatggtcttcataactcagagtgcggga
cggctgatgcgcgctctttttgagattgtattgaaaagaggttgggccgagttagccgag
aaagccttaaacatgtgcaaaatggtaagtaagaggatctggagtgtacaaacgcctcta
cgccaatttcactggattaaaaacgatgtattaatgaaactggagaaaaaagatttagca
tgggaaagatattatgatctgtcatcacaggagctaggagagctcgttcatgctcgaaca
ttaggacgagaccttcacaaatgcattcaccgattcccaaaacttatcctagcagcacat
gttcaaccaatcacccgaagcatcttaagagttgaactcactatcactccagattttcag
tgggaagacggtattcatggctatgttgaaccgttttgggtgattgtagaagataatgac
agggatgcaattcttcatagcgagtatttcctgctgaaaaaacagtatatcgatgaagac
cacactttaaacttcactctaccgatatacgaacctttgccacctcagtactttattaag
gctgtctcagacaaatggctcgggtcaacatcggttttacctgtttcattctctcactta
atcttacctgaaaagtacccaccaccaaccgaattactagacttgcagccacttcctgta
accgcattgagaaacccgttatatgaagccctttatccagaattcacacacttcaatcct
gttcaaactcaagttttcacagtgttgtacaatactgatgacgatgcgttgattgctgca
ccggctggaagtgggaaaactatatgtgctgaattttctgttttacgaaatcatcagaaa
gggcccgataacgtcatgcgtgccgtttatattgcccctgttgaagcacttgctaagaag
agatctaacgaatggaaaaagaaatttggggacgggctcgggttgagagtttgtgagttg
accggggaaaccacgactgatttgaagttacttgaaaaagggcaggtgataatcagcact
ccggataagtgggatgcgttatcgcgtcgttggaaacaacacaaacatgttcgacaagta
agtctttttattgttgatcagttgcatcttgttggggggcaaaatggtcctgttttggag
gttattgtatccaggatgaggtacattgcaagccagggtcataatatacggatagtggcg
ttatcgacttcagttgcaaatgctaaagatttgggtgaatggatgggtgcaacgtcacac
ggtattttcaatttctcgccgggtgttcggcccaatcctctcgagattcatattcaaggc
acagatatagctaatttcgaaactcggatgcaagcaatgagcaaacagacttacactact
attgtacgacatgctaataataaaaaccccgccattgtgtttgttcctacaaggaaacac
acccgcctgacagctgtcgatctgatgacatactcgattgccgaaagtaattatcagggc
gagaagatagataataagcatttgttcttacttcaatctgaaaacgagttgggcccgttt
attgatcgaatccaggaacccgtgttgaaggagactttgaaatatggggtggggtatcta
catgagggtgtcgctcccactgaccaagaaatagttaagacactgtttgaaactggttgc
attcaagtatgtgtaattagtggtgctatgtgttggggggtctcgcttcgggcacactta
gtggttgttatgggcacacagtattacgattgtcgggaaacggcccacactgactacccg
atcaccgatcttcttcaaatgatgggccacacaagccggccacttgtcgataattgtggg
aagtgtgttattttttgtcatggcccgcgcgaaaaatactacaaaaagtttttgtttgaa
ccgtttccagttgaaagtcatttgcagcatcacctacatgataatttgaatgctgaggtg
gttgttaaagtggttgcaaacaaacaagacgctgttgattatctgacgtggacgtttatg
taccgtagactcacccataacccgaactactacaatctgcaaggtgcaagtcaaaggcat
atacaggaacatctatcggagcttgtggagaacacgttgaatgatttggaatcgagtaaa
tgtgttttaatcaatgatgatttttacctttcgcctcttaatcttggtttgattgcttca
tattattacattagttacacaacaatcgaacggtttagttctttgatttccagtaagaca
aagttgaagggtcttttggagattttagctgcagcatctgagtatgagacgctcccggtt
cgacccggtgaagaggtattgatccgtaggttaatcaaccatcaacggttttcgtttgaa
aacgtgaaatatggggacccacatgtcaaggcttacgtgctgctgcaagctcatttttca
aggcagttggtaggtggaaatctcggctctgaccagcgagaagtggttttatctgctggt
aggttgctgcaggctatggttgatgttatcgcaagcaacgggtggcttaatttagctctt
cttgcaatggaagttagccaaatgttgacacaaggaatgtgggaacgggattcggttctg
ttgcagctgcctcatttcactaaagaattagccaaacggtgtcaagaaaacccagggaga
actgtcgagacggtttttgatttggttgaaatggaagatgacgaaaggcgggagttatta
cagatgtcggatactcacttgatggatatcgcaaagttttgcaaccgttatcccgatatt
gaactgtcatatcaagtgttggatagtgataatgttaaggctggggaggattttactcta
gtggtgacacttgaacgggatcttgagggtacgaccgatgtggggctagtggatgccccg
agatacccaaaagcgaaagaagagggatggtgggttgttgttggggataccgaaagtaat
gaggtgcttgcgaacaggagagtttacttgcagaggaagtcaagggtggaacttgataat
ataactgctccaagtgaaccgggggagaaaaggttgaccctgtatttgatgtgtgattct
tacgtgggatgtgaccaggagtatagcttcgctgtcgatgttaaaccggcagccccttag
DBGET
integrated database retrieval system
