Helianthus annuus (common sunflower): 110895714
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Entry
110895714 CDS
T05101
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110895714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110895714
03012 Translation factors [BR:
han03012
]
110895714
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110895714
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110895714
Translation factors [BR:
han03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110895714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
nSTAND3
AAA_22
T2SSE
ATPase
AAA_19
AAA_16
Myosin_head
PhoH
Motif
Other DBs
NCBI-GeneID:
110895714
NCBI-ProteinID:
XP_021998730
LinkDB
All DBs
Position
12:137436147..137442057
Genome browser
AA seq
1152 aa
AA seq
DB search
MHFRLGFVVASNFRRKSPLVATLLTHKTLQAGVGASSPLLHRRSSQINHGDSSFLPHSPG
GIRGYAALDQFSDDDYECDYENHPASSSVANIDEWKWKLSMLLRNEADQEIVSRDKRDKR
DFEQISNLATRMGLFCESYGKVVVASKVPLPHYRPDLDDKRPQREVVIPLSLQRRVEGLL
QEHLDRMQLNSGDASSINHAELVNQGGNLDPLLEVNLMESVLQRRSLQMRNKQHAWEESP
EGKKMLQARMSLPAFKEKERLLQAIAQNQVIIISGETGCGKTTQLPQYILESEIESGRGA
FCNILCTQPRRISAMAVADRVSTERGEHLGESVGYKVRLEGMKGKGTHLLFCTSGILLRR
LLSDRNLDGVTHVFVDEIHERGKNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNYF
EGAPMIHIPGFTHPVRAHFLEDILEITGYKLTPFNQVDDYQEKLWKTKRQQLPRKRKNNI
TLLVESALSESSFENYSPKARDSLSSWIPDCIGFNLIEAVLCHICRKERAGAVLVFMTGW
EDICSLRTQLKAHPLLGDPNRVQLLTCHGSMPSSEQKLIFEKPPPNVRKIVLSTNMAEAS
ITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPR
CVYHAFSNYQLPELLRTPLNALCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDSLKMI
GALDENEDLTHLGEYLAMLPVDPKLGKMLIMGAFFRCFDPILTIVSGLSVRDPFLLPHEQ
KDRATTAKSKFSAKDYSDHMALVRAYEGWKEAEREGSAYEYCWRNFLSAQTLQAIHSLRN
QFHYILKDAQLLEAEATLNNSLSHNQSLVRAIICAGLFPGIASVVQRETSMSFKTMDDGQ
VWLHPNSVNMRYETIPYPWLVFGEKVKINTVSLRDSTGVSDSVLILFGGGLINGVSPGHL
KMLRGYIDFFMDPTLAESYVNLKQQLDQLLQRKLKDPKVDIYKEGKYLMRAVQELVSGDQ
CEGRFVFGRESKKSIESNDKDTFTRDGANPKSLLQTLLMRAGHTPPKYKTKHLKTNEFRA
LVEFKGMQFVGKPKRNKQLAERDAAVEALGWLTHTSGSNKQQDDDNSPPDLTDNMLKLLS
TRRKSKSRSGRG
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgcatttcagattagggtttgtggtggcctccaatttccgcagaaaatctccacttgtc
gctactctcctcacacacaagactctacaagctggtgttggtgcttcttctccgctacta
caccggaggtcttcacaaatcaaccatggagattcttcgttccttccacactctcccgga
ggaatacgtggctacgcagcacttgatcagttctctgacgatgactacgaatgcgattac
gagaatcacccggcatcgtcatcagtggctaatattgatgagtggaagtggaaacttagc
atgctgttacgtaacgaagcagaccaagagattgtgtccagagataaaagagacaagaga
gactttgagcaaatatctaatctggccacgagaatgggccttttctgtgaatcgtatgga
aaagtggtggttgcaagcaaggtgcctcttcctcactacaggcccgatcttgatgataag
cgtccccaaagagaggtagtcatcccattaagcttgcagagaagagtagaaggtctgctg
caggagcatcttgatcggatgcaattgaattctggagatgcttcctccattaatcatgct
gagttggtgaaccagggtggtaatctagatcctttgttagaggtgaatcttatggaaagc
gttcttcagagacggagtttgcaaatgcgaaataagcaacacgcttgggaggaatcacca
gaaggcaagaagatgcttcaggcacgcatgtctcttcccgccttcaaagagaaggaaagg
ctgctccaagcaattgcacagaatcaggttattatcatatctggagagactggatgtgga
aagaccactcaactgccacaatacatattggagtccgagatagaatctggtcgtggtgca
ttttgtaacatactttgtacacaacctcgaagaatctctgccatggctgttgcagacaga
gtctctactgaaaggggagagcatcttggtgaatcagttgggtataaagttcgattagag
gggatgaaaggaaaaggcacacatttgcttttctgtacaagtggtattttgcttcgtagg
ctgttgagtgaccgcaatttggacggtgtaacccatgtcttcgttgatgaaattcatgag
cgtggcaagaatgaagacttcctattgattgtattgaaggatctccttccacgtcggcgg
gacctgagattaatactgatgagtgctacactgaacgctgagctattttccaattacttt
gaaggagcaccaatgattcatattcctgggttcactcacccagtgagggcacatttctta
gaagatatactggagattactggatataagttgactcctttcaaccaagttgatgattac
caagaaaagctgtggaaaacaaaaaggcagcaacttcctcgcaaaaggaaaaacaacatc
actcttcttgttgagtccgcgttgagtgaatcaagctttgaaaattatagccccaaggcg
cgtgattctttgtctagctggataccagattgtattggatttaatcttattgaagcagtt
ttatgccatatttgccgcaaggaaagagcaggtgccgtcctggtatttatgaccgggtgg
gaggatatctgttctttgagaactcaactgaaagcccatcctttacttggagatcccaac
agggttcaactgcttacatgtcatggttccatgccatcatctgaacagaaactcatattt
gagaagccacctcccaatgtacgtaagatagtactctccacaaatatggcagaagccagt
atcacaatcaatgatgtagtttttgtggttgactgtggaaaagctaaagaaaccacttat
gatgctcttaataatactccttgtctcttaccttcatggatatctcaagcatctgctcga
caaagaagaggtagggctgggcgtgtgcaaccgggagaatgctaccacctttatcctaga
tgtgtttatcatgctttctctaactatcagctacctgagcttttaagaactcccctcaat
gctctttgcttgcaaatcaaaagtttgcaggttggtagtatcggggagtttttgtctgct
gccttacaaccaccagagccattggctgtccaaaatgcggtggattctttgaagatgatc
ggagcattagacgagaatgaagatcttacacatcttggtgaatatctggcaatgcttccg
gtggatcccaagttagggaaaatgctgattatgggtgctttctttcgctgctttgatcct
attcttacaattgtttctggactcagtgtcagagatccttttcttttgcctcatgagcag
aaagatcgagctactacagcaaaatcaaaattttctgcaaaggattacagtgatcatatg
gcactggttcgtgcatatgaaggatggaaagaagctgaaagagaaggatctgcttatgag
tattgctggaggaattttctttctgcccaaacactacaagctattcattctcttaggaat
cagtttcactacatcttaaaggatgctcagttgcttgaggctgaagcaaccctcaacaat
agtttgagtcataatcaatccttggttagggccattatatgtgccggcctcttccctggc
attgcatctgtagtgcaaagggagacgtcgatgtccttcaaaactatggatgatggccaa
gtctggctccatccaaattctgtgaacatgcgatacgagacgattccatatccatggctg
gtctttggggagaaagtgaagatcaacactgtttcattacgtgattctactggcgtatct
gattcagttctaatcctctttggtggtggtctaatcaatggagtttcgcctggacacctg
aaaatgttgagagggtatattgatttcttcatggatcctactttggcggagtcgtatgtc
aacctaaaacaacaacttgatcagctcttgcaaagaaagcttaaagatcccaaggttgac
atctacaaagaaggcaagtatctgatgcgtgcggttcaagagcttgtgtcaggagatcaa
tgtgaagggagatttgtattcggtcgtgaaagcaaaaagtcaatcgagtcaaatgacaaa
gatacattcacaagagatggggcaaacccgaaaagcttgctgcaaactctgttgatgcgg
gcgggccacactccaccaaaatacaaaacaaagcatctaaaaacaaatgagttcagagca
ttagtcgagtttaaaggaatgcagtttgtaggaaaaccgaaaagaaacaaacagcttgct
gagagggatgctgctgtggaggcgttaggctggttgactcacacttctgggtcaaacaaa
caacaagatgatgataattccccacctgatctaaccgacaacatgcttaagcttttgagt
acgcgcagaaaatcaaaatctcgttctggccgagggtaa
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