Helianthus annuus (common sunflower): 110899077
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Entry
110899077 CDS
T05101
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110899077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110899077
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110899077
mRNA degradation factors
5'-3' decay
Decapping complex
110899077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
110899077
NCBI-ProteinID:
XP_022001643
LinkDB
All DBs
Position
13:114258633..114267075
Genome browser
AA seq
1346 aa
AA seq
DB search
MASPGNQNQQPGGGPFDVQRFFNPASSPPPISSNPNFVQNPNPNNNKNHNIPYPVPSSAA
SYPPPSVTAGGIGGAYSYAPQTPIYHPQFHISSPSFPPENPTAVANLHHQRSVPYSTPPL
QPPSPSGNPNFNNHSGNPNFVQNPNPNPNHGARLMALLSAPPPTAVDNPSQLSAPMAQGS
GSSNPVMTSSLVPAALHSGSGPMRMLSSKLPKGRHLGGDRAVYDIDVRLPGEVQPQLEVT
PITKYGSDPGLVVGRQIAVNKSYICYGLKLGAIRVLNINTALRSLFKGLAQRVTDMVFFA
EDVHLLASASIAGRVYVWKITEGTDEDDKPQIMGKIVIAIQIVGEGESVHPRVCWHCHKQ
EVLVVGIGKRVLRIDTTKVGRGEVYSAEEPLICPVDKLINGVQFVGNHDGEVTDLSMCQW
MTTRLVSASVDGTIKIWEDRKSTPIAVLRPHDGLPVNSATFLTAPHRPDHIILITGGPLN
REVKIWASDREEGWLLPSDADSWHCLQTLELKSSSESRLEDAFFNQVVALPQAGLLVLAN
AKKNAIYAVHLEYGPNPEATHMDYIAEFTVTMPILSFTGTSDVLPHGEQIVQVYCVQTQA
IQQYALDLSQCLPPPVDNIAYDKQDSVVSNEAASTDGLSVSEPYGSKTETSLDVSIPTSD
VGSVSRQPSSLPLVEASIGSPPVASSPTLTRELSDLKSPVTDHESGEPKIIEYSVDKQMN
AAALASDIVTDETKFKHPTHLVTPAELMATSSSEINHISDQKNDLDLNVPDVVSNISDLQ
NVELEVKEVGETGKSETVEPVSQTEVHGFASQASDFGRVVSGKRYSANDLKQLAGSGQSQ
TLGGQDEREDSNIDVSVPVETPVPTTLDSSNPVSSAKGKKQKGKNAHGSNPSSVSPSVFN
STDSSAEPGVGSSVPSIEAILPQLHSMQETITQVLTNQKEIQKQIPGMVAASITKECRRI
EAAIGKTMEKTYKTSSDALWARTQEEFTKLEKSNRERSQQLSGLVTNGYKDLPAAFEKML
KKETSALAPAIVRLLSPVIEKTVSTAITEAFQRGVADKLVNQLEKSVNSKLETTIGRQIQ
TQFQTSGKQALQEALKSSMEASVIPAFEMSCKTMFDQVNATFQKGVNEHTTTAQQQIESA
HSPLAVALRDAINSASSLTKTLSGDLADGQRKLVALALAGANSESANPLTQLGNGPIGSF
HEKIEAPLDPTKELSRLVYEHKYEEAFTAALQRSDVWIVSWLCSQVDLQGLLASNPLPLS
QGVLLSLLQQLACDIGNDTAKKLAWMMDVVVAIKPSDSMIAMHVRPIFDQVHSILNHQMS
VPTTSVSELSSIRVVMKLINSTLRTL
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacctggaaaccagaaccagcagccaggtggaggaccattcgatgttcaacga
ttcttcaatcctgcatcttctccaccaccaatttcatcaaaccctaattttgttcaaaac
cctaaccctaataataataagaatcataatattccatatcctgtaccgtcgtccgcggcg
tcgtatcctcctccctccgtcaccgccggcggcatcggcggcgcgtactcatatgccccg
caaacgccgatttaccacccacagtttcacatctcgtcaccttcgtttccaccggaaaac
cctacggctgttgctaacttgcaccaccagcgatctgttccttactctacgccccctctc
caaccccctagcccgagtggaaaccctaattttaacaaccatagtggaaaccctaatttt
gttcaaaaccctaaccctaaccctaatcatggagctagattgatggcgttgttaagtgct
ccaccgcctacagcggtcgataacccgtctcagttatcggctcccatggcgcagggtagt
ggaagctctaaccctgtgatgacgtcatcgttggtgccggctgcattgcattcgggttcg
ggtccaatgcgaatgctgagtagtaagttgccgaagggacggcatttggggggtgatcgg
gctgtgtatgatatagatgttaggttgcctggagaggtgcagcctcagcttgaggttact
ccgattaccaagtacgggtcagatcctgggcttgttgtgggtcggcagattgcggttaat
aagagttatatatgttatgggttgaaacttggggcgattcgggttttgaatattaatact
gctttgagatcactgtttaaaggtttagctcagagggttacagatatggttttctttgcc
gaggatgttcaccttctagctagtgcaagcatagctggacgagtttatgtatggaaaatt
acagaagggacggatgaggacgataaaccgcaaattatgggaaagatagttattgccatt
cagattgtaggagaaggggagtcggttcatcctcgagtttgttggcactgtcataaacaa
gaagttcttgttgttggaattggaaaacgtgttttgagaattgatactacgaaggttggg
agaggtgaagtgtattctgcagaggaacctcttatatgcccagttgataagttaattaac
ggagttcagtttgttggtaatcatgatggtgaagtgacggatttatcaatgtgtcaatgg
atgactactcgtttagtttctgcctcagtagatggaacgataaagatttgggaagatcgg
aagtccacaccaattgcagtattgcggccccatgacggtttgccagtaaactctgctaca
ttcttgaccgctcctcaccgcccagatcacatcatacttattaccgggggtccattgaac
cgtgaagtgaaaatatgggcctctgacagagaagaaggatggttgcttcctagcgacgcc
gattcatggcactgcttacagacgttggaattaaagagttcttccgagtcgcgactcgaa
gacgcgttcttcaatcaagtggttgcgttaccccaagcgggccttttggtactagcaaac
gcaaagaaaaacgctatttacgctgtccacttagaatacgggcccaacccagaagccact
cacatggattacattgcagagtttaccgttactatgccaatactgagttttacgggtact
agtgacgtgttaccacacggggagcagatcgttcaggtttactgtgtccaaacgcaggcc
attcaacagtatgcgttagacttgtcgcaatgcttaccgcctccggttgataacatcgct
tacgataaacaagattcggtcgtttcaaatgaggcggctagtacagacggtttgagcgtt
tcagaaccgtatggaagtaagacggaaacatcgttggatgtctcgatacctacctcggat
gtcggttccgtttcgaggcagccgtcgagcttgcctttggtcgaagcttctattggatca
ccgccagtcgcttcaagtcctactttgactcgtgaactgtccgatttgaaaagtccagtc
accgatcatgaatctggtgaaccgaaaattattgagtattcagttgacaagcaaatgaac
gctgccgcgttagcgtctgatatcgtaactgatgaaaccaagtttaagcatccgactcat
ttagtaacgcctgctgaattgatggccacctcatcttctgaaataaatcacatatcggac
cagaagaatgatctggatttaaatgtacctgatgtggtttcaaatatttccgatctgcag
aatgttgagttggaggttaaggaggttggtgaaactggaaaaagtgaaaccgttgaaccc
gtttctcaaaccgaggttcatggttttgcttcacaggcatcggatttcgggcgtgttgtg
tctgggaaaaggtatagtgctaacgatctaaagcaacttgcgggttcgggtcaaagtcaa
actttgggtggtcaagatgaaagagaagactcgaatatcgatgtttcggtacctgttgag
actcccgtacctacaacacttgactcgtcaaaccctgtgtcttccgccaaagggaaaaaa
cagaaaggaaaaaatgcccacgggtcaaatccgtcttctgtttctccgagtgttttcaat
tctaccgactcgtctgctgaaccgggagtcggttctagtgttccgtctattgaagcgata
cttccgcaacttcattctatgcaagaaactattactcaggttttgacgaatcaaaaagaa
attcagaagcagattccgggaatggtggcagcatccattacaaaagaatgccggagaatc
gaggcagccataggaaaaacgatggagaaaacttacaaaactagttcggatgctctgtgg
gcccgcactcaagaagaatttacaaaactagaaaagtcaaaccgagaacgaagtcaacaa
ctttctggtttggttacgaatggctacaaggatttgcctgcagcgtttgagaaaatgttg
aaaaaagaaacgtctgcgctcgcgccagctattgtgcgtttgctttcaccagttattgaa
aagacggtgtctactgcaattaccgaggcttttcagagaggcgttgcggataagttggta
aatcaactggagaaatcggtaaattctaagcttgaaactactattggtaggcaaattcaa
acccaatttcaaacttctggtaaacaagcgctacaggaagcacttaagtctagtatggag
gcttctgttattcccgcttttgagatgtcttgcaagaccatgtttgatcaagttaacgct
acatttcaaaaaggagtgaacgaacacacaactacagctcagcaacaaatcgagtccgca
cattctccgttagcagtagctttgagggatgccataaattcagcatcgtctttgactaaa
acattgagtggtgatttagctgatggtcaacggaagttggtagctcttgcactcgcaggg
gcaaattcggaatcagctaacccgttaacccaattgggcaatggacctattggcagcttc
cacgaaaagatcgaggcaccattagatccaacaaaagagctttctagattagtatacgaa
cacaaatacgaagaagcgttcactgcagctcttcaaagaagcgatgtctggatcgtgtcc
tggttatgctctcaggttgacttgcaagggttattagcaagcaatccgttgcctctgagt
caaggagtactgttatcgttgctgcagcagttggcttgtgatatcggaaatgatacagct
aaaaagctcgcgtggatgatggacgtggtggtggcgatcaagccatcagattcgatgata
gcaatgcatgtacgcccgatatttgatcaagttcactcgatactaaaccatcaaatgagt
gttccaaccacttcggtatctgagctgtcaagcatacgggtggtcatgaaactcatcaac
tcgacactcaggaccctgtaa
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