Helianthus annuus (common sunflower): 110899619
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Entry
110899619 CDS
T05101
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110899619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110899619
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110899619
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110899619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
110899619
NCBI-ProteinID:
XP_022002196
LinkDB
All DBs
Position
13:complement(143989426..143998687)
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AA seq
613 aa
AA seq
DB search
MLFENRNQVRSIKPNELQKHSQDSNKIASVFTDQSQSSGVNGSTATFPDATGRAFTAAFS
SQLGSSVADMNQNDGIDVLGLRSINGNFNIPSMPGAYTSRNSGLNGPLNGVQPPTGSLSN
GRYAVNNLPVALSQHSAASSLGLSGLTNNGGSGMGQSLGNREHIISSMAMSNLVNGGNMG
RSLSSGGLNMPGVASRLNLTAPQMVSLLGNSYSGGGGPLSQNQFQAGNNHLNSMALLSEL
NRDHSFDMNDFPQLSGHLSSAAGSQRQLGGLTRRQSVGFMQQNQEFSIQNEDFPALPGYK
GGNEFPVNIHQKEQLRDNTVSMMQSQQHLPVGRSNVFSLGGAYSSHQQQQHAPINGGASY
LPTNTQDLHFHSSEARNSGMLATGSRPVNLSNTVSGGGGGSYDQLMQQYQHFQKQSQIRL
AGPFRDPDTKPTQLSQSNADRFGLLGLLNVIRMNNPDLTPLALGIDLMTLGLNLNSADNL
YKKFSSPWSDESAKGEPHYSVPECFNTKQSSPLNQDSFSRFSPETLFYIFYSMPKDEAQL
FAANELHNRGWFYHRELRLWFSRAPNMELLVKTSTYERGCYYCFDPNTWETIRKDNFVVQ
YEMVEDRPVVPRH
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgcttttcgaaaatcgaaatcaagtacgttcgataaaacccaacgagcttcagaaacac
tctcaggactcgaacaagatcgcgagtgtgtttacagatcaatcacagtcgtctggtgtg
aacggttcaacagcaacttttccggacgccactggtagagcttttaccgcagcgttttct
tctcagttaggttcctctgttgctgatatgaatcaaaatgatggaatagatgtactaggg
ttgcgaagcataaatgggaacttcaacattcctagcatgcctggcgcgtatacgtcaaga
aattctggattaaatggtcctttgaatggtgtacagccacctacaggaagtttatctaat
ggacgatacgcagtaaacaatcttcctgttgcactttctcagcattctgctgctagctca
cttggactttcaggacttacaaacaatggagggtcaggtatgggtcaaagtttagggaac
agagaacacattataagctcaatggcgatgagtaacctcgttaacggtggaaacatggga
agaagtttaagctccggtggactgaatatgcccggggttgcatctcgcttgaatttaacc
gcaccgcaaatggtatcccttttaggaaattcgtactctggtggtggagggccgctttca
caaaatcaatttcaagcggggaataatcacttaaattcaatggcgttgttatctgaactg
aatcgtgaccattcgtttgacatgaatgatttccctcagttaagtggacatcttagctct
gctgctggttctcaacgacaactagggggtttgacacgtcgacaaagtgtcggttttatg
caacaaaaccaagaatttagcattcaaaatgaagattttccggctttacctgggtataaa
ggcggtaatgagtttccggtcaatatacaccagaaggaacagcttcgtgacaatacagtg
tctatgatgcaatcccagcaacatttgcctgtcggaagatcgaacgtgttcagtttggga
ggtgcgtattcatcacatcaacagcagcagcatgctccgattaatggtggtgcatcgtac
cttcctacaaacactcaagatctccattttcatagttctgaggcaagaaactcggggatg
cttgccactggatcaagacctgtaaacttatcgaacacagtgtcaggtggcggtggcggg
tcatacgatcaactgatgcaacagtatcaacactttcagaaacagtcacagatacgcctt
gcgggcccatttagagacccggacacgaagcccacccagttatcccaatctaatgccgat
agatttggattgctagggttattgaacgtcataaggatgaataatcctgatttgacccct
cttgctttgggtattgacctaatgacgcttggtctaaacttgaattccgctgataatctc
tacaagaaattttcatctccgtggtctgatgagtctgcaaagggggagcctcattattcc
gttcctgagtgtttcaataccaaacaatcatctcccctaaaccaagatagtttctcaaga
ttttctcctgagactttgttttatattttctatagcatgccaaaggatgaggctcagttg
tttgcagctaatgaattgcacaatagaggatggttttaccacagggagctgcgtctatgg
ttctcaagggctccaaacatggaattgctagtaaagacgagtacttatgaaagaggttgt
tactactgtttcgatcccaacacctgggaaacaattcgaaaggacaactttgttgttcaa
tatgaaatggtagaagaccggccggtggttccccgtcattag
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