Helianthus annuus (common sunflower): 110904087
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Entry
110904087 CDS
T05101
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110904087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
han03021
]
110904087
03036 Chromosome and associated proteins [BR:
han03036
]
110904087
Transcription machinery [BR:
han03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110904087
Chromosome and associated proteins [BR:
han03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110904087
PBAF complex
110904087
GBAF(ncBAF) complex
110904087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
SWIB_eIF2D
Nup188_N
Motif
Other DBs
NCBI-GeneID:
110904087
NCBI-ProteinID:
XP_022005585
LinkDB
All DBs
Position
14:complement(143223030..143226085)
Genome browser
AA seq
512 aa
AA seq
DB search
MSMNNTNPQKNNTNPPNPNPHHLSSQFQLPQFSAAQAHAHAIAQAQLNAQAKVAAQAQAN
HAQFQAQLQAQGLALTNSPLFSGSGNTSAKRAPQKPLGRPPGVSNANAGSPMRTMELTPA
ARHKKKQKVSGKQIHDRVAAILPPSALYTQLLEFESRVDAAIIRKKIDIQEAVKDPPSVQ
KTLRIYVFNTFANQVQTIPQKPNAEPPSWTMKIIGRILEEGMDPEPQAGMMSKPNPLYPK
FSSFFKRVGIQLDQKLYPDNHTILWDSSRTPTPHEGFEVKRKGDKEFTVNIRLEMNYLPE
KFKLSSSLMEVLGIEVDTRTRVISAIWQYVKARKLQDADDPSYFNCDPPLLKVFGEEKVK
FSMVSHKISSHLSPPPPIHLEHKMKLSGNSPAGNACYDVLVDVPLLVQKDLNALLANNEK
TKEIEACDEAICTSIRKINEHRKRRAFFLGFSESPVEFIDALIESQGKDLKLLVGDANRN
AEKESQADFYNQPWIEDAVIRYLNRRPARKST
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgaacaacactaatccccaaaagaacaacacgaatccaccaaaccctaatccc
catcatctgtcaagccagtttcagctccctcagttttccgcagcccaggcgcatgcgcac
gcgatcgcgcaagcgcagttaaacgctcaggccaaagttgcagctcaggctcaggctaac
catgcccagtttcaagcccagcttcaggctcaaggtctggcgcttactaattcgcccctc
ttttcgggatcgggcaatacaagtgccaaacgcgcgcctcagaagccactcgggcggccg
cctggagtgtcgaacgctaatgctggttctcccatgaggaccatggagcttacgccagct
gcccgtcataaaaagaaacagaaggtttctggaaaacagatacatgacagagtggctgcg
attctgccaccgtctgctttatacacgcagcttcttgaatttgagtcacgtgttgacgct
gctataataagaaagaagatagacattcaggaagctgttaaagacccaccttctgttcag
aagacgcttagaatatatgtgtttaacacgtttgcgaatcaggttcaaacgattcctcaa
aagccgaatgctgagccgccttcttggacgatgaaaattatagggagaatattggaagaa
ggaatggatcctgaaccgcaggctggtatgatgtcgaaaccgaacccgttgtacccaaag
ttttcatctttctttaagagagttggtatacagttggaccaaaaactgtatcctgataat
catacgattttgtgggatagttctagaaccccgacacctcatgaagggtttgaagtcaaa
agaaaaggtgataaggagtttactgtgaatataaggttagaaatgaattatctgcctgag
aaatttaaactttcgtcttctttaatggaagttcttggaattgaagttgatactcgaaca
agagttatttccgccatctggcaatatgtcaaagctcggaagttacaagatgcggatgat
ccatcgtattttaattgtgatccaccgcttcttaaagtattcggtgaagaaaaagtgaaa
ttttccatggtatcacataagatttcaagtcatttgtctccaccgccacctatacatttg
gagcataagatgaagctctcggggaacagtccagctggcaatgcatgttatgatgtactg
gtggatgtgccgcttttagtacaaaaagatttgaatgctttattggctaacaatgagaaa
accaaggaaattgaagcctgtgatgaggcaatatgtacgtcaataagaaagataaacgag
catcgtaaaaggcgggctttctttcttggatttagtgagtctcctgttgagtttatcgat
gctttgattgaatctcaaggcaaagatttgaagcttcttgttggggatgcaaatcgtaat
gctgaaaaagaaagtcaagctgatttctataaccaaccctggattgaagatgcagttatc
cgttatctgaatcgcagaccagcccgtaaaagcacatga
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