Helianthus annuus (common sunflower): 110904377
Help
Entry
110904377 CDS
T05101
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110904377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110904377
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
110904377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
RRP7
Motif
Other DBs
NCBI-GeneID:
110904377
NCBI-ProteinID:
XP_022005926
LinkDB
All DBs
Position
14:152137897..152143299
Genome browser
AA seq
874 aa
AA seq
DB search
MDQSITQQTQTQQSQPKPESFKQFSSSISKLSGSSRGIPCNKDFHFYFNFQEFNNPIQEI
AKRSQSVLETIGSSAEQLWGSKQINFLDDDDDEAYDWLVSFNDELFERFDASVDEFKRVR
SKEEESGVRVMSSVVDDDGFQLVKGRKKKGVEKDFLVSGSGDNNLGNSSSSVKVASNAMG
TTKAKVSFHIASIPRPQDEYKILVNNSNQPFEHVWLQRSEDGSTLIHPLEKLSVTDFIDK
TVSDVEPVKPPPVESTSFKLVQDVKDLKELAAKLRDANEFAVDLEHNHYRSFQGLTCLMQ
ISTRTEDFIVDTLKLRVQIGPYLREVFKDPTKRKVMHGADRDIIWLQRDFGIYVCNMFDT
GQASKVLKLERNSLEYLLKHFCDVAANKEYQNADWRLRPLTSEMLRYAREDTHYLLYIYD
LMKRKLLSSSTDPNCPEASLVEVYQRSYDLCMQLYQKEILTENSYLNIYGLYDADLNGQQ
LAIVAGLCEWRDVIARSEDESTGYILPNKVLIEIAKQMPVTTGKLRHLLKSRHPYIERNL
GSIVGIIKHSMQNGTAFEPVAKKLKEEHIEMMAARNAKNANGEEATEVTGDGSVSNVAED
ETVKKEVGNVIAGANQNRELDGSSVSRVSIEVQKKPSRAFGAMFGNAAGKRKSSLESKAT
EAIKVEQIKSSVSLPFRSFTDKTEASHPAVKECPKPQEIEIPVLPAATISEPEDDVILLQ
SDCEVEEEEKPANAENSEQKTEDENNVKLLDFDSCSDEEQDGNEGTMSLSDLSLSFQKCV
QTADEKKTLNRVEGDSAGLVKVTPFDYAAARKEARFGEDGSGGEDEGKQGKRERKKAGGG
RKKEAGGGERSGDFQLGRRRQAFPATGNRSSTFR
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggatcaatcgatcacccaacaaacccaaacccaacaatcacaaccaaaaccagaatca
ttcaaacaattttcctcttcaatctcaaaactttccgggtcttcaagaggcatcccctgc
aataaagattttcatttctacttcaactttcaagaattcaacaacccaattcaggaaatc
gctaaaagatcccaatcagttcttgaaacaattgggtcatcagcagagcagttatggggc
agtaaacagatcaactttcttgatgacgatgatgatgaagcttatgattggttagttagt
tttaacgacgagttgtttgaaaggtttgatgcgtctgttgatgagtttaagagggttaga
agtaaagaagaggaatctggtgttagggttatgagttcagttgttgatgatgatgggttt
cagttggttaaaggcaggaaaaagaaaggggttgagaaagattttttagttagtggtagt
ggtgataataatttgggtaattcttcatcatctgtgaaggttgcttctaatgcaatgggg
acaacaaaggctaaagtttcgtttcatatagcgtcgattcctagaccacaggatgagtat
aagatactggttaacaatagtaatcagccatttgagcatgtttggttgcagagaagtgag
gatgggtccacattgatacacccattggagaaactttcagtcacggatttcattgataag
acggtaagtgatgtagagcctgtgaaaccacctcccgttgaaagtacttcttttaagctc
gtacaagatgttaaagatttgaaggaattagctgctaaattgcgtgatgccaatgaattt
gcggttgatttagaacacaatcattatcgatcttttcaaggtttgacttgcttgatgcaa
atatctaccagaacggaagattttatcgtagatacgttgaaactacgggttcaaattggc
ccgtatctgcgagaggttttcaaagatcctaccaaaagaaaggttatgcatggagctgat
cgggatattatatggctgcaacgtgactttggtatatatgtctgcaatatgtttgatact
ggacaggcctcaaaggtgttaaagttggagagaaactccctagagtatctattgaaacac
ttttgtgacgttgctgcaaataaagaataccaaaatgcggactggcgattgcgaccgttg
actagtgaaatgctgagatatgctagagaagacacacattatcttctgtacatatacgat
cttatgaaaagaaagttgctttcatcatcaacagatccaaactgccccgaagcatctctt
gttgaggtataccaacgcagttatgatctatgtatgcagctctatcagaaagagattctg
actgagaactcatatctaaatatatatgggttgtatgatgctgatctcaacggccagcaa
cttgcgattgttgcaggactttgtgagtggagagatgttattgctcgatcagaagatgaa
agtaccggttatatattgccaaacaaagttcttattgaaattgcaaagcaaatgccggtg
acaactggaaaattgcgacacttattgaaatcgagacacccatatattgagcgaaatctt
ggttcaatcgttggcatcattaagcattccatgcagaatggcactgcatttgaacctgtt
gccaagaaactgaaggaggaacacattgaaatgatggctgcaagaaatgctaaaaatgct
aatggtgaagaagcaacagaagttaccggagatggaagtgttagtaatgtcgcggaagac
gagactgttaaaaaggaagttggaaacgttattgctggagcgaaccaaaaccgtgaattg
gatggctcttctgtatccagagtaagcattgaggtacagaagaagccaagtcgtgcgttc
ggagccatgtttggaaatgcagcaggaaagagaaagtctagtcttgaatcaaaggcaacc
gaggcgattaaggttgaacagatcaaatcttctgtgtcccttccgttccgttctttcaca
gataaaactgaggcttcacatcctgctgtgaaagaatgccctaaacctcaagaaattgaa
attccggttcttcccgcggcaacaatctctgaaccggaggatgacgttatattgctgcaa
tctgattgcgaggttgaggaagaggaaaaaccagcaaatgctgagaatagtgagcagaaa
acagaagatgaaaacaatgtgaaattgttggattttgattcttgttccgatgaagaacaa
gatggaaacgaggggaccatgtcgctttcagatctttcattgagcttccagaaatgcgta
cagactgctgatgagaagaaaacgttaaaccgagtggaaggtgattcggcagggctggtg
aaggtgacaccgtttgactatgcagcagctcggaaagaagcgaggtttggggaagacggg
tctggtggggaagatgagggtaaacagggtaagcgtgaaaggaaaaaagcaggtggtggt
cgtaagaaggaggctggtggtggtgaaaggagtggagatttccagttgggtaggcggcgg
caagcttttcctgctactggtaaccggagttctactttccggtga
DBGET
integrated database retrieval system
