Helianthus annuus (common sunflower): 110904859
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Entry
110904859 CDS
T05101
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110904859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110904859
03012 Translation factors [BR:
han03012
]
110904859
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110904859
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110904859
Translation factors [BR:
han03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110904859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
NPHP3_N
T2SSE
Dicer_dimer
PhoH
AAA_11
AAA_7
Myosin_head
Motif
Other DBs
NCBI-GeneID:
110904859
NCBI-ProteinID:
XP_022006425
LinkDB
All DBs
Position
12:complement(27074043..27081629)
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AA seq
1167 aa
AA seq
DB search
MKDAPRPPSYGSVYVPPHQRLRSVVTSPASAPDISTSPAVVDNNNYNYNNNNNSNYFVNA
SYSGNNVRFPSPYNPYLPPQQQPQQMIPQVGASYGRFEPSVHPGASTSDIDSWKWKLTTL
LQSRDKQELISREKKDRRDYEQIAALATSMGLHSHLYAKVLVVSKVPLPNYRFDLDDKRP
QREVSLPPELQKRVDAHLEEYLSHKAKSNNGSRDSLYSTTSSNGNDEGLFEQPDLGPQIQ
VAIQQVYRIRSVQLQADQQAWQDSSDGWRMGEFRKSLPAYKEKDTILNAISQNQVVIISG
ETGCGKTTQIPQYILEQETDSLRGATCSIICTQPRRISAMSVSERIATERGEKLGDTVGY
KVRLESIKGRDTRLLFCTTGYLLRRLLIDSNLKGVTHVIVDEIHERGMNEDFLLIVLKEL
LPRRPDLRVVLMSATLDADLFSSYFGGSPSVKIPGFTHPVHSYFLEDVLEKTGYRLTAEN
QIDDYGQERPWKSNKQFIKKRKSQIASAVEGALLSADFRNYSQQTRESMSCWNPDCMGFN
LIEFLLVTICENEKPGAVLVFLTGWDDISSLKEKLQAHYLLGDSARVLLLACHGSMASSE
QKLIFEKPEGGVRKIVLATNMAETSITIDDVVFVIDCGKAKETSYDALNNTPCLLPSWIS
KVSAKQRRGRAGRVQPGECYHLYPRCVYNAFAEYQLPEILRTPLQSLCLQIKSLKLGSIS
EFLSKALQSPKLLAVQNAIEYLKVIGALDESENLTVLGRYLSMLPVEPKLGKMLILGAVF
NCLDPILTVVAGLTVRDPFLAPLDKKDLAEAAKAQFSRNHSDHIALVRAYEGWKVAEYEL
TGHEYCWKNFLSAQSMKAICSLRQEFQSLLNDTGLIDCNITIYNTWSYDENLLRAIICYG
LYPGICSVVHNEKSFSLKTMEDGQVHLHSNSVNARDSKIPYPWLVFNEKIKVNSIFLKDS
TAISDSVLLLFGGTLSKGDIDGHLKMMGGYLEFFMDPGLAKMYQSLRRELDELIQCKLTN
PRMDIHTHHELLSAIRLLLPEDKCNGKFVFNRQVLYKDSKPYIASVPAPAPPASRLESGP
GGDNPKGQLQTLLTRAGCPAPTYRTSQLPDNQFRSICEFNGMQIMGHPCHNKKQAEKDAA
AEALERLTGGNNGNTSVMLKKSKKSHN
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacgcaccgcgcccgccgtcgtacggctccgtctacgtgccgccgcatcaacgc
cttcgctccgtcgtgacatcacctgcctctgctcccgatatctctacctctcctgctgtt
gttgacaataacaattacaattacaataataataacaatagcaattattttgttaatgca
tcttatagtggtaataatgttaggtttccgagcccttataatccgtacttgcctcctcaa
caacagcctcaacagatgataccacaagtcggagcctcgtatggccggttcgagccctcg
gttcaccctggtgcttccacatcagatatagattcttggaagtggaagctaacgacacta
ctgcagagcagagataaacaagagctgatttcaagggaaaaaaaggacagacgtgattat
gaacagatagcagccttagcgactagcatgggtttgcacagccatctgtatgccaaagtg
cttgtcgttagcaaggttccattgcctaactaccgttttgatctggatgataaacgccca
cagagggaggtgtctttgcctccagagttgcaaaagagagttgatgctcatctggaagaa
tatctctctcataaggctaagagtaacaatggttctcgagatagtttatattcaacgaca
agtagcaatggtaatgatgaaggattatttgagcaacctgatctgggcccacagatccag
gtggcaatacaacaagtctatcggataagaagtgtgcaactgcaagctgaccaacaagca
tggcaggactcttccgatggctggaggatgggagagtttcgtaaaagcctaccagcttat
aaagaaaaagatacaatattgaatgccatttcacagaatcaggttgttatcatctcaggt
gaaactggttgtgggaaaacaacacagattccccaatatattttagagcaggagaccgat
tcccttcgtggggccacatgtagtatcatatgcactcagcctcgacgtatctccgctatg
tctgtttctgaaagaatcgccactgagagaggggagaaattgggtgacactgttggatat
aaagttaggttagagagtataaaaggaagagacacccgactgctattctgcaccactgga
tatttgttgagaagattactgattgatagtaatttaaagggtgttactcatgttattgta
gatgagattcacgagcgtggaatgaatgaagattttctgcttattgttttgaaagaacta
cttcctcgtcgccctgacctcagggttgttttgatgagtgcaacccttgatgcagatctc
ttttcatcttactttggtggttctccgtcggtcaagattccgggttttacgcaccctgtg
catagttattttcttgaagatgttttggaaaaaactggatatagattgactgcagaaaat
caaatcgatgattacggtcaggaaagaccatggaaatcaaataaacaatttattaaaaag
agaaaaagccaaattgcctctgctgttgagggggcgcttttatctgccgacttcaggaac
tatagccaacagacacgtgaatctatgtcttgttggaatcccgattgcatgggtttcaac
ctcatagaattcttgttagtcacgatatgtgaaaatgaaaaaccgggtgctgttttagtc
tttctgaccgggtgggatgacataagttctcttaaggaaaaactacaagcacactatctc
cttggagattcggctcgtgttttattgcttgcgtgtcatggttctatggctagctcagag
cagaaattaatatttgaaaagccagaaggtggggtgaggaagatagttttggctacaaat
atggcggaaaccagtatcacaatcgatgatgtggtttttgttatcgattgtggaaaagct
aaagagacatcatacgatgctttaaacaatactccctgtttacttccttcttggatatcc
aaagtttctgctaaacaaaggcgaggacgggcgggtcgtgttcaacccggagagtgttac
catctatatcctcgatgcgtctataacgctttcgcagagtatcagttgcccgaaatacta
aggacacccttgcagtcgctatgtcttcaaatcaaaagtttaaagcttggaagtatatcc
gaattcttatctaaggctctacagtcacccaagttattagcggttcaaaacgctatcgag
tatctcaaggttatcggtgctttagacgagagtgaaaatctaactgtattgggccgttat
ttgtcaatgcttcctgtggagcccaagctcggaaagatgcttatactcggtgcggttttt
aactgccttgaccctatattaacggttgttgccggtcttactgtcagagatccttttctg
gcacctttagacaagaaggatttggcagaggcagccaaagcacaattttcccgtaatcat
agcgaccatattgcccttgtgagggcgtatgagggttggaaagtagctgaatatgagctc
accggacatgaatactgttggaaaaattttctttctgcacagtctatgaaagccatttgt
tccctacgtcaggaatttcaatcgttgcttaatgataccggtcttatcgactgcaatata
actatttacaacacgtggagttacgatgaaaatctcctccgcgcaattatctgctacggc
ctgtatcctggcatttgctctgtcgtgcataatgaaaaatcgttttcactcaaaacaatg
gaggatggtcaagtgcatctacactctaactcggttaatgcacgcgattctaaaattccc
tacccatggctggtcttcaatgaaaagattaaagtgaactccatttttcttaaagattca
acagccatatcggattcagtgctactcctatttggtgggaccctttcaaaaggcgatatt
gacgggcacttgaaaatgatgggaggatacttggagttctttatggacccggggttagcc
aaaatgtatcaaagtttaagacgggagcttgacgagctaattcagtgtaaattaacgaat
ccccgaatggacatacatacacaccacgagcttttatccgccatacggttgcttctacct
gaagataaatgtaacggcaaattcgtattcaaccgtcaggtgttgtacaaagactcaaaa
ccttatatcgcgtccgtaccagcgccagcaccaccagcttcgagattagaaagtggacca
ggcggtgacaatcccaaaggtcaactacaaacattacttacgagagccgggtgccctgcc
ccaacctaccgaacctcccaactgccggacaaccagtttcggtccatttgtgaattcaat
gggatgcagattatggggcacccttgccacaacaagaaacaggcagaaaaagacgctgca
gccgaggctttagaacggctcacgggtggcaacaatggtaatacttcagtgatgctaaag
aaaagcaagaaaagtcacaactaa
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