Helianthus annuus (common sunflower): 110904993
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Entry
110904993 CDS
T05101
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03013
Nucleocytoplasmic transport
han03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110904993
03015 mRNA surveillance pathway
110904993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110904993
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110904993
mRNA cycle factors
P-body specific factors
110904993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF3549
Motif
Other DBs
NCBI-GeneID:
110904993
NCBI-ProteinID:
XP_022006548
LinkDB
All DBs
Position
14:162971468..162978735
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AA seq
1176 aa
AA seq
DB search
MEHPDEDSHGVGDSQSKQDDEASRREELKKSLVAKLALRQTNLNPERPDSGALRTLDSSI
KRNTAVIKKLKQINEEQRESLMDELKNVNLSKFVSEAVAAICDAKLKSSDIQAAVQVCSL
LHQRYKDFSPTLVQGLMKTFFPGKSAEDVDADRNLKAMKKRSALKLLLELFFDGVIEDAS
VFVTIIKDLASLEHLKDRDLAHTNLSLLASFARQARYFIGLPHAGEDLVEEFFKGLNITA
DHKKVFKKAFQTYYDAAVELLRSEHTSLRQLEHENSKILNSKGELSEENASSYEKLRKSY
DQLYRGVSALAEALDMQPPVMPEDGHTRLTIGDDVASPGTGKEASVAEALWDDEDTKSFY
ECLPDLRAFVPAVLLGEAEQKVNDQSSKTQDQPTDIAPELDQGHVAAHDTGDTSVDAAVL
TDRKSEKKKDEDEKDKGKEKENDGETEKDKPRGPEGTNLDGLLQRLPGCVSRDLIDQLTV
EFCYLNSKSSRKKLARALFNVPRTSLELLPYYSRMVATLSTCMKDVPSTLLQLLEEEFNF
LINKKDQMNIETKIRNIRFIGELCKFKIAPSGLIFSCLKACLDDFTHHNIDVACNLLETC
GRYLYRHPDTNVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKVRPP
LHQYIRKLLFTDLDKSSIEQVLRQLRKLPWSECEPYLLKCFLKVHKGKYGQIHLIASLTA
GLSRYHDEFAVAVVDEVLEEIRVGLEVNEYGMQQRRIAHMRFLGELYNYEHVDSSVVFDT
LYLILVFGHGTEEQDVLDPPEDCFRIRMIITLLETCGHYFGRGSSKRKLDRFLIHFQRYV
LSKGALPLDIEFDLQDLFADLRPNMTRYSTIEEVDAALAQLEEHERTVLTEKVSGEKHVL
QEKPSINPAASGNSSVNGQVIANGTEENGGTHEEGNGGYDSASQGSTMDPDGNDDEEELD
DDACDSDDDYVDQDGQASDEDDEIHVRQKVMRVDPEEEADFDREFRALMQESLDSRKLEL
RARPTLNMMIPMNVFEGSTRDHLGRVSEGESGDEAIDYESGERKEVQVKVLVKRGSKQQT
KQMLIPSDCSLVQSTKQKEAAELEEKQDIKRLVLEYNDREEEELNALGNLPAGWSQSGGG
RVVYRGHSWEGHGGRSGSRHRYPHHSGGGYYYSRRK
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggaacaccctgatgaggattcacatggtgttggtgatagccagagcaagcaagatgat
gaggcatctcgtcgtgaagaattaaagaagtcattagtagcaaaactagcccttcgtcaa
actaatctgaatcctgaaagacctgactccggtgcactacgaacattggactccagcatc
aagcgtaatacagcagtcattaagaaacttaagcagatcaatgaagagcagcgtgaaagt
ttaatggatgaattaaaaaacgtcaacttaagtaaattcgttagcgaagcagtggctgca
atatgtgatgccaagttgaaaagttcagacatacaggctgcagttcaggtctgttcattg
cttcatcaaagatacaaagacttttctccaacgttggtccaagggctcatgaaaacgttc
tttcctgggaaatctgcagaggatgtagatgcggaccggaatttgaaggccatgaagaaa
cgcagcgctttaaaactccttctagaactcttttttgacggagtcatagaagacgcttcc
gtttttgtgactattattaaggatcttgcgagcttagaacacctaaaagatagagattta
gctcatacaaacttgtctcttcttgctagttttgctcgacaagcaaggtacttcatagga
ctcccgcatgctggagaagatcttgttgaagagttttttaaggggcttaatatcactgcg
gaccataagaaggtctttaaaaaggcatttcagacatattatgatgcagcagttgaacta
ctgcgctctgaacacacttcactgcgtcaattagagcatgagaattcgaagattttaaat
tcgaaaggtgagctcagcgaggaaaacgcttcttcgtatgaaaaactaaggaagtcttat
gaccagttgtatcggggcgtgtctgctttagctgaagcccttgatatgcaaccacctgta
atgcctgaggatggccacacaaggctcacaattggtgatgatgtggcatcacctggtact
ggaaaagaagcttctgttgccgaggcattatgggacgatgaagatactaaaagcttttat
gaatgcttacccgatctcagagcatttgttcctgctgtattactgggagaagcagagcag
aaagtgaacgatcaatcatcaaaaacacaagatcaaccaactgatatagcacctgagctt
gatcaaggtcacgttgctgcccatgacactggagatacttctgtggatgctgcagttcta
accgaccgtaaaagtgaaaaaaagaaagatgaagacgaaaaggataaaggaaaagaaaaa
gaaaacgatggtgaaactgagaaggataagcctagaggtcccgaaggaaccaacttggat
ggtttgttgcagaggcttccgggctgcgtgagccgtgacttaattgaccagttgactgtg
gagttttgttatctaaattcaaaatcatcccgcaaaaagcttgctagagctttgttcaac
gtaccgaggacctctttagaactgctaccatattactcgcgcatggttgccacactgtca
acttgcatgaaggacgtaccttctacgcttttgcagttattggaggaagaattcaacttc
ctcatcaataaaaaggatcaaatgaacatcgagactaagatcaggaacattcgatttatt
ggagagctttgcaaatttaagattgcaccatctgggctcattttcagctgtctaaaggct
tgtttagatgactttacccatcacaacatagatgttgcatgcaatcttcttgagacgtgt
ggcagatatctttaccggcaccctgataccaacgtgcgtatggcaaacatgttagaaatc
cttatgcgcctaaaaaacgttaagaatttggatcctaggcacagtacccttgtggaaaac
gcgtattacctgtgcaaaccacctgaacgatctgccagagtctccaaagttcgccctcct
ttgcatcagtatattagaaagttacttttcacagacctggataagtcttcaattgagcaa
gtattgagacaacttcgtaagctaccgtggagtgaatgcgaaccgtatttgttaaaatgc
tttttgaaggttcacaaaggaaaatatggtcaaattcatttgattgcttcactaactgct
ggattgagtcgctatcatgatgagtttgcagttgctgtagtagacgaggtcttggaggaa
attcgggtaggtttggaggtaaatgagtacgggatgcaacaacgacgaattgctcatatg
cggtttctaggcgagctatataattatgaacatgtggattcttcagttgttttcgataca
ttatatcttattctcgtttttggtcatgggactgaagagcaagatgtacttgatccgcct
gaagactgctttagaattagaatgataatcacacttctcgagacttgtgggcactacttt
ggtcgaggttcatcgaagagaaaactggatcgatttttgattcattttcaacgatacgta
ctcagtaaaggcgcacttcctctcgatatagaatttgacttgcaggacttatttgctgat
ttacgccccaacatgactcgttattcaactattgaagaggttgatgctgctctggctcag
cttgaggagcatgaacgcacggttttaaccgaaaaggttagtggcgagaagcacgtgttg
caggaaaaaccgagtattaaccctgctgcttctggaaactcatctgtcaatggtcaagtt
attgcaaatggtactgaagaaaacggcgggacccatgaagaaggtaacggaggatatgac
agtgcatcacaaggtagcacaatggatccggacgggaatgatgacgaggaagagcttgat
gacgacgcatgtgacagcgatgacgattatgttgaccaggatggtcaagcttccgacgag
gatgacgagattcatgttaggcagaaagtgatgcgagttgaccctgaggaagaagccgat
tttgaccgggaatttagggctctaatgcaggaaagcttggattcgaggaaactggagttg
cgggcccgaccaacgctaaacatgatgataccgatgaacgttttcgaggggtccacaaga
gatcatctcggaagggtgagtgagggagaaagtggtgacgaggcaatagattacgagtct
ggagaacgtaaggaagtgcaggtcaaagtcctggtcaaacgaggcagcaaacaacaaacg
aaacagatgctcatacctagtgactgctctctcgtgcagagcacaaaacagaaagaagca
gcggagttggaagagaaacaagatattaagagactggtcttagaatataatgatagagaa
gaagaggaactaaatgcattggggaatttgccagctggctggagtcaaagtggcggtggt
agggttgtctacagagggcactcgtgggagggtcatggcggcaggtctgggtcccgccat
aggtacccacatcattcaggtggtggatactattatagccgaagaaagtga
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