Helianthus annuus (common sunflower): 110910052
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Entry
110910052 CDS
T05101
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110910052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
han03041
]
110910052
03009 Ribosome biogenesis [BR:
han03009
]
110910052
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110910052
Spliceosome [BR:
han03041
]
Complex A
U2 snRNP components
U2 related factors
110910052
Complex B
110910052
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
110910052
Ribosome biogenesis [BR:
han03009
]
Eukaryotic type
90S particles
Helicases
110910052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
SRP54
T2SSE
Fructosamin_kin
AAA_30
Flavi_DEAD
AAA_7
PhoH
SLFN-g3_helicase
TrwB_AAD_bind
TsaE
NACHT
Motif
Other DBs
NCBI-GeneID:
110910052
NCBI-ProteinID:
XP_022010455
LinkDB
All DBs
Position
15:3070997..3078610
Genome browser
AA seq
727 aa
AA seq
DB search
MGTERKRKVSLFDVVDDSSTAKLNKANGGAAVHGVDGMPVVNRWNLRSYSQRYYDILEKR
KTLPVWHQKEEFLKALRENQTLILVGETGSGKTTQIPQFVLEAVELESADKRRKFMVGCT
QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAMTDPLL
ERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMK
VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKE
VGNLGDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPLTEGGPAGRKIVISTNIAETSLTID
GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN
NDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD
EGNLTKLGEIMSEFPLDPQMGKMLVVSPEFKCSNEILSIAAMLSVPNCFVRPREAQKAAD
EAKARFGHVDGDHLTLLNVYHAYKQNNDDQSWCYENFVNHRAMKSADNVRQQLARIMARF
NLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDRKP
EWVIYNEYVLTSRNFIRTVSEVRGEWIVDIAPHYYDLENFPNCEAKRALEKLYKKREKDK
DESRNRR
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgggcacagaacggaagagaaaggtgagtctgttcgacgtcgtggacgattcatcaacg
gcgaaattgaacaaagcgaacggcggagccgccgttcacggcgttgacggtatgccggtg
gtgaacaggtggaatctacgctcgtactcgcagcggtattacgatatcttggagaagagg
aaaactttgccggtttggcatcagaaagaggagtttcttaaggcgttgagggagaatcaa
accctaattttggtcggtgagaccggtagtggtaaaactactcagattcctcaatttgtt
ttggaagctgttgagttagagagtgcggataaacgtaggaagttcatggtgggatgcacg
cagcctcgtagggtggctgcaatgtctgtttccaggagagttgcggaggaaatggatgtt
acgattggagaagaagtcggttacagcatccggtttgaagattgcagcagcgcaaaaact
gtcttgaagtacttgacagacggtatgctattacgagaagcaatgaccgacccacttcta
gaaaggtataaagtgataattcttgatgaagcccacgaaagaacattggctactgatgtt
ctattcgggctcttaaaagaagtgctgaaaaacaggcctgatctaaagctagttgttatg
agtgctactctcgaagccgaaaagtttcagggttatttcttcggtgcaccgttaatgaaa
gttccgggccgacttcaccctgtggagatcttttacactcaagagcccgaacgcgactat
cttgaagcagcaattcgaaccgttgtacaaattcacatgtgtgagccacctggcgatatc
cttgttttcctcaccggtgaagaagaaattgaagacgcctgtcgaaaaataacgaaagaa
gtcggtaatttaggagaccaggtggggcccgtgaaagtggttccactttattcaactctc
ccaccagctatgcagcagaagatatttgagcccgctccagctccgttaactgaaggtggg
cctgcgggccggaagattgtgatttcaacaaacattgctgaaacgtctttaaccatagac
gggatagtttacgttatcgacccggggttcgcaaagcagaaagtttataacccgcgtgtt
cgagttgagtcgttattagtgtccccaatatcaaaggcgagtgcccaccagagatcgggt
cgagctgggagaacacaacccgggaaatgtttcagattatacaccgagaaaagttttaat
aacgatctacaaccacagacgtaccccgagattcttcgatctaatttagcgaatacggta
cttacgttgaagaaacttggtattgatgatctcgttcattttgattttatggacccacct
gctcctgaaactttgatgcgggctctagaggttttgaattacttgggagcgttggatgat
gaaggaaatttgactaaattgggtgaaattatgagtgaattcccattagatcctcagatg
ggaaagatgcttgttgttagccctgaatttaaatgttcgaatgaaatcctttcaatcgcc
gcaatgctatcagtacccaattgctttgttcggccccgagaagcccagaaggctgctgac
gaggctaaagcacgatttggacacgttgacggggaccacctcacgctcttgaatgtatat
catgcctacaaacagaataacgatgatcaatcatggtgttatgagaactttgtgaatcac
cgggccatgaaatctgcagacaacgtgaggcagcagttagcccgtattatggcccgtttc
aacctgaagctatgcagcacggatttcaacagccgtgattattacgtcaacatcagaaaa
gctatgttagcagggtattttatgcaggttgcccacctggagcgcaccggacattatttg
actgttaaagataatcaagtggttcatttgcacccgtcaaattgtttggatcgtaagccg
gagtgggtgatttacaatgaatatgtgttgactagcaggaatttcatacgcactgtttca
gaagttcgtggtgaatggattgttgacattgctccacactactatgatcttgaaaacttc
ccgaattgcgaagcaaaacgcgctcttgagaagctgtacaagaaacgggaaaaagacaag
gacgagagcagaaacagaagatag
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