Helianthus annuus (common sunflower): 110911741
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Entry
110911741 CDS
T05101
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110911741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
han03021
]
110911741
03019 Messenger RNA biogenesis [BR:
han03019
]
110911741
Transcription machinery [BR:
han03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110911741
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110911741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCCH
Sema4F_C
Motif
Other DBs
NCBI-GeneID:
110911741
NCBI-ProteinID:
XP_022012063
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All DBs
Position
15:57384779..57390308
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AA seq
685 aa
AA seq
DB search
MEDGEGGLSFDFEGGLDAAPTQPTASVPVIHQSTDNGPPSSAAHLPYSAAAPPSSATDPA
SAATANANFPGRRSYRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPICRFFRLYGECREQ
DCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPSVEEVLQKIQQLTSYNYGNS
NRFFQNRNANNSQQSDKFQFPQGNNDANQGAKPSTTDSASMQPAAPLSPHQQQQVSQLAQ
SQAQSNGQQNQANKTAIPLPQGTSRYFIVKSCNRENFELSVQQGVWATQRSNEAKLNEAF
DSVENVILIFSVNRTRHFQGCAKMTSKTGGSVGGGNWKSEHGTAHYGRNFCVRWLKLCEL
SFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISLAAESKREE
EKAKGVNLENATENPDIVPFEDNEEEEEEESEEEDDSYEQGFGMAAQGGRGRGRGLWPPH
MPLGRGPRPMPGMRGFPPLMNMMGPDGFSYGGVGPDGFPVPDLMNMGPRGFGPFGPRFPG
DFQRPPFSNMMFHGRPGPHGNFPGGGFGMMMGPGPGRPPFMGPGGRGGRPGFPQQQQQQL
QTSQNTSRTKRDQAGGSGNDRYSGGGDGVTMGGIDDETQPGGGSTLKNGESESEDEAPRR
SRHGETKKRRGGSEGDAATASDDKV
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggaagacggagaaggaggtctgagcttcgacttcgaaggcggtctcgacgccgcacct
acgcaacccaccgcatccgttcccgttattcaccaatccaccgacaacggtccaccgtct
tccgccgcacacctcccctactccgccgccgcccctccgtcctccgccaccgatcctgct
tccgccgccaccgccaacgccaactttcccggccggaggagctaccgtcaaaccgtatgc
cgccactggctccgcagcctgtgtatgaaaggagaagcctgtggattcctccatcagtat
gataaatcacgaatgcctatttgtaggttttttaggttgtacggagagtgccgtgaacag
gattgtgtttataagcatactaatgaagatatcaaggagtgcaacatgtacaagttgggg
ttttgtccaaacggtcctgactgtcgatataggcatgcaaagctcccgggacctcctcct
tcggtggaagaagtactccaaaagattcagcaattaacttcctacaattacggcaattct
aataggttttttcaaaaccgaaacgccaacaactcgcaacaatctgacaaatttcaattt
ccacaaggtaacaatgatgcaaatcaaggtgctaaacctagtaccacagattctgcttca
atgcagcctgcagcacctttgtcgccacatcagcagcaacaggttagccagttagctcag
tcccaagcgcagtcaaatggtcaacaaaatcaagcaaataaaactgctatacccttgcct
caaggaacatcaaggtattttattgtaaaaagttgcaaccgtgaaaattttgagttgtcg
gttcaacaaggagtgtgggccacccaaagaagcaacgaggctaaactaaacgaggctttt
gactctgttgaaaatgttattttaatattttctgtgaacaggacacgccattttcagggc
tgtgcgaaaatgacttctaaaactggtggttctgttggtggcggcaactggaaatctgaa
cacggtactgcacattatggacggaatttctgtgttagatggcttaagctatgtgaactg
tcctttcataaaactcgacacctgaggaacccttacaatgagaatttacctgtgaagata
agcagagattgtcaggaactagagccctcgatcggtgaacaattggcctctcttttgtat
cttgaacccgacagtgaactcatggcaatatcacttgcagcagaatcaaaacgagaagaa
gagaaggcgaaaggagtaaatctagagaatgcaaccgaaaatcccgatattgttccgttt
gaggacaacgaagaggaggaggaagaagagagtgaggaagaggacgatagttacgaacag
ggtttcggcatggcggcacaaggcggcagagggagaggcagagggttatggccacctcat
atgccgctaggaagggggcctcgccctatgcccggaatgagaggtttcccccctctcatg
aacatgatggggcccgatggattttcttacggtggagttgggcccgacgggtttcccgtc
cccgatcttatgaacatgggcccgcgtggattcggtccgttcgggcctaggttccctggt
gattttcaacgcccgccgttttctaatatgatgtttcatggccggcccggcccgcatggg
aattttccagggggtggattcgggatgatgatgggccctgggcctggacggcccccattc
atgggcccgggtggaagaggcggccggcctggttttccacagcaacagcagcagcagcta
caaacttctcagaatactagtcggactaagagggatcaagcgggaggtagcggtaacgat
agatatagtgggggcggcgacggtgttactatgggcgggattgatgatgagactcaacct
ggtggtggaagtactttaaaaaacggtgaaagcgagagtgaagatgaggcacccaggaga
tctagacatggtgaaacgaagaagaggcgtgggggctcggagggtgatgccgctacagcc
tctgatgacaaggtttaa
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integrated database retrieval system
