Helianthus annuus (common sunflower): 110912288
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Entry
110912288 CDS
T05101
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110912288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
han03041
]
110912288
03009 Ribosome biogenesis [BR:
han03009
]
110912288
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110912288
Spliceosome [BR:
han03041
]
Complex A
U1 snRNP components
U1 related factors
110912288
Complex B
110912288
Ribosome biogenesis [BR:
han03009
]
Eukaryotic type
Pre-60S particles
Helicases
110912288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
bPH_10
Motif
Other DBs
NCBI-GeneID:
110912288
NCBI-ProteinID:
XP_022012669
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All DBs
Position
15:complement(115738334..115742962)
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AA seq
563 aa
AA seq
DB search
MAAPRYAPEDSTLPKPWKGLVDGTTGNIYYWNQDTDVTQYERPTVSNGPAQAIKSSMVPS
GVIAAGLLGSSAGSALSPDAYRRQHEITVTGDSVPPPFTSFEDTGFPSELLREVLAAGFT
SPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLLPGFIHLQRVQRNRHMGPTVLVLSPT
RELATQIQAEAVKFGRSSKIQCTCLYGGAPKGPQLRELERGTDIVVATPGRLNDILEMRK
ISLSQISYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAADLLVN
PVQVNIGNVNELVANKSITQFVEVLAPTEKHRRVEQILRSQEQRAKVIIFCSTKRMCDQL
ARNLTRQFSAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGLDIKDIRVVINYDF
PTGVEDYVHRIGRTGRAGATGEAYTFFGDQDAKHASDLIKLLKGANQLVPTELQGMAARG
GGMGGKFKRWGSGPGSGFGGRGGRSDSNFGGRGGRGGRSESSFGGRSSWNSGRGGGRDSN
RGGYGNNGSGWSRARSRSPERFN
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggctgctccacgctatgccccagaggattctactcttccaaaaccttggaaagggttg
gttgatggtacgactgggaacatatactattggaatcaagataccgatgttactcaatat
gagcggcccacagtgtcaaacggtccagctcaagccattaagtcttctatggtgcccagt
ggggtaattgctgctggacttcttggatcttcagccggaagtgctttatctccagatgct
tatcgacggcaacatgagataaccgttaccggagacagcgttccaccaccttttacatca
tttgaagataccgggtttccatctgagctgcttagagaggtacttgctgccgggtttaca
tccccgactccaatacaagcacaatcatggcctgttgcccttcaaagtcgtgacatcgta
gccattgcaaagacgggctccggaaagaccttgggttacttacttcctggatttattcac
cttcaacgagtgcaaagaaaccgtcacatgggtccaaccgtcttggttttgtcacccact
agagaactggctacccagatacaagccgaagcagtcaagttcggaagatcgtcaaagatt
cagtgcacctgtttgtatggaggagcgccaaagggcccgcaactaagagagttggagcgc
gggactgatatcgtggttgcaactccgggtcgtttgaatgatatcttggagatgagaaaa
ataagccttagtcagattagttatttggtgttggatgaagcagaccggatgttagacatg
ggtttcgaaccgcagattaggaaaatcgtcaaggaggttcccgcgcgtcgtcagacactt
atgtacaccgccacatggccaaaggaggttcgcaagatagctgcggatttgttggttaat
cccgttcaggtcaacatcggcaacgttaacgagcttgttgccaataagtccatcactcag
tttgttgaggttttggctcccacggagaaacatagacgagtggaacaaattttaagatct
caagaacagagagcgaaggtcatcatattttgttcaaccaaaaggatgtgtgaccagctg
gctcgcaacttgacccgccagttttctgctgctgctattcatggagacaaatctcaaggg
gagagagattacgtgttgaatcagtttcgtaccggcaggtctccggtgcttgtagcaaca
gatgttgctgctcgtggactagatatcaaggatatcagggtggtgatcaactacgacttc
cctactggtgtggaggattatgtgcaccgaattggaaggactggtagggcaggtgcaacc
ggagaggcatataccttttttggggaccaggatgcaaaacacgcttcggatctaatcaaa
ttattaaaaggtgcgaatcagcttgtcccaacggaacttcaaggcatggcggcacgtggt
ggtgggatgggtggcaagtttaaacgatggggttctggtcctggttctggttttggtggt
cgtggaggacgatctgattcaaactttggtggtcgtggaggacgtggaggtagatctgaa
tcaagctttggtggaaggagtagttggaattcgggtaggggtggaggtcgtgacagcaat
aggggtggttacggcaataatggttcaggatggagtagggctcgtagccgcagcccggag
aggtttaactaa
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