Helianthus annuus (common sunflower): 110914699
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Entry
110914699 CDS
T05101
Name
(RefSeq) THO complex subunit 5B
KO
K13174
THO complex subunit 5
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110914699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110914699
03041 Spliceosome [BR:
han03041
]
110914699
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
110914699
Spliceosome [BR:
han03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110914699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
CAF1C_H4-bd
Motif
Other DBs
NCBI-GeneID:
110914699
NCBI-ProteinID:
XP_022015163
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All DBs
Position
2:41565907..41571071
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AA seq
810 aa
AA seq
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MDLNMVEPGEILPDRKIDTSAYDLLQTTRTSVEDIVAQMLSIKKDGGDTTRSQLPELVTQ
MLLNFVNLRKANRSILLEEDLVKAETEHAKAPVDFTTLQLHNLMYEKNHYVKAIKACKDF
KSKYPDIELVPEEEFHKDAPEEIKNSVQSKDSAHNLMLKRLNFELFQRKELAKLHEKLEE
QKKVLQDTIANRKKFLSSLPSQLKSLKKASLPVQNQLGILHTKKLKQHQSAELLPPPLFM
IYSQMLAHKEAFGESIDLEIVGSLKDALTFARQQANKDNGMSTTNMENSKMEDDVVDEED
DGQRRRKRPKKVQVKENVDAARIYQTHPLTLILQIHDDEASDPKSTKLIALTFEYLLKLN
VVCVGIERSNDGPESNILCNLFPNDPGLELPHQSAKLWTGDGPIFDEKRSSRPYKWAQHL
AGIDFLPEVSPLLTAGADSTNGETTKQTAIVSGLSVYRQQNRVQTVVQRIRARKKAQLAL
AEQIDSLTKLKWPSLTCQTVPWFSHARLCSLQNWTIIPSHKPTVPIEEQNQSRQELETVA
GPDTSKSEIENIREDGELPSLNPAATVANETVVTVTPLKISGTDHSKRLALITKSVASPM
SKGKSPSSRKLDEDLDLMLVSDDEVDEPLQSEPEPVLTGNGGVHVIDNSWIACGARDYRL
VLTRKVNSGDGYIKLEAKITVSMEYPLRPPLFTLNLFRAASTETESEAEANEWFNELRAM
EAEVNIHVIKTIPWEEENMVLGHQICCLAMLFDFYVNGDSSTERGNSTCVVDVGLCKPVN
GGLASRTYRGRDHRKMISWKDNGCTSGYPS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggacctaaacatggtggaacccggcgagattctaccggatcggaaaatagatacgtcg
gcatacgatctgcttcaaactactcgcacttccgtcgaggatatagtcgcacagatgctt
tcgattaagaaagacggaggcgatactaccagatctcaattacctgaactcgtcactcag
atgcttctcaacttcgtcaatcttcgtaaggcaaatcgttctatattgcttgaagaagat
cttgtgaaagcagaaacagaacatgcaaaagcacctgtggacttcacaaccctgcaactc
cacaatcttatgtatgagaagaatcattatgttaaagcgataaaggcttgcaaagacttc
aagtcaaagtatccggacattgaacttgttcccgaagaagagtttcacaaagacgcgcca
gaagaaataaaaaactccgtacagtcgaaagacagtgcccataatttgatgcttaagagg
ctcaactttgagctgttccagcgaaaagagttggcaaaacttcatgagaaactggaagag
caaaagaaagttcttcaggacactattgcaaacaggaaaaagtttctttcaagtcttcct
tcacaacttaaatctttaaaaaaggcatctttgccggtgcaaaaccaactgggaattctt
cacacaaagaaactaaagcagcatcaatcagcagagttgcttccacctcctcttttcatg
atttactcacaaatgttggctcataaagaagcgttcggcgagagtatcgatctcgagatc
gtgggaagcttgaaagacgctcttacttttgcacgacaacaagcgaataaggataacggc
atgtccactactaatatggagaactccaagatggaagatgatgtggttgacgaggaagat
gacggtcaacggaggagaaagcgtccgaaaaaagtccaagtaaaagaaaacgttgacgcg
gcaagaatataccaaacacacccacttacacttatcctccaaatacacgatgacgaggca
tctgatcctaaatctacaaagcttattgcattaacattcgagtatttgttgaagttgaat
gttgtttgcgttggtattgagagatcgaatgacggcccagagagtaacattttatgcaat
cttttcccaaatgacccgggactcgagcttcctcaccagtcagctaagctttggactggt
gatggcccaatattcgatgaaaaacgatcttcacgtccgtataaatgggcccaacattta
gcgggaattgattttttaccagaagtttcaccccttcttacagcaggtgcagattctaca
aacggtgaaacaacaaaacaaactgctatagtttccgggctatcagtatatcgccagcag
aatcgggtccagactgttgttcaaagaattcgggcccgaaagaaggcccaactggccctt
gcggaacagattgactcgctaacaaagcttaaatggcctagtttgacttgtcaaaccgta
ccgtggttttcgcatgcccgtctatgcagtttacaaaactggacaattataccctcacat
aagcccaccgtacccattgaagaacaaaatcaatcccgtcaagaactcgagacggttgct
ggacccgacacttcaaagtctgagatagagaacatacgcgaagacggcgagcttccgtct
ctaaatccagctgcaaccgttgcgaatgaaaccgtggttacagttacgccgttgaagata
tcaggcactgatcactcgaaacgtcttgcgttgattactaaatcagtggcgtctccaatg
agcaagggtaaatcacctagctctagaaagcttgatgaagatttggatttgatgttagtg
tctgacgatgaggtggatgagccgttacaatccgagcctgaacctgtactaacagggaat
ggaggcgtacatgtgattgataactcgtggattgcgtgtggggcccgggactaccgtctt
gttttaacgagaaaagtcaacagtggtgatgggtatataaagttagaagcaaagatcaca
gtcagcatggagtatcccctcaggccgccactttttacgttgaatctttttagagccgct
agtacggaaaccgaatcagaggctgaggctaacgagtggtttaatgaactccgggccatg
gaagctgaggtgaatattcatgtgataaaaacaataccctgggaggaagaaaacatggta
ttgggccatcaaatatgttgccttgcaatgctgtttgacttttacgtgaacggagattca
tctaccgagaggggaaatagcacttgtgtggttgatgtcggtttgtgcaagcccgttaat
ggtgggcttgcatccagaacatacaggggccgggatcataggaaaatgatctcctggaaa
gacaacgggtgcacttctggatatcctagctaa
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