Helianthus annuus (common sunflower): 110914951
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Entry
110914951 CDS
T05101
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03030
DNA replication
han03420
Nucleotide excision repair
han03430
Mismatch repair
han03440
Homologous recombination
han03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110914951
03420 Nucleotide excision repair
110914951
03430 Mismatch repair
110914951
03440 Homologous recombination
110914951
03460 Fanconi anemia pathway
110914951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
han03000
]
110914951
03032 DNA replication proteins [BR:
han03032
]
110914951
03400 DNA repair and recombination proteins [BR:
han03400
]
110914951
Transcription factors [BR:
han03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
110914951
DNA replication proteins [BR:
han03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
110914951
DNA repair and recombination proteins [BR:
han03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
110914951
MMR (mismatch excision repair)
110914951
DSBR (double strand breaks repair)
HR (homologous recombination)
110914951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
DUF223
tRNA_anti-codon
Motif
Other DBs
NCBI-GeneID:
110914951
NCBI-ProteinID:
XP_022015242
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Position
4:complement(53903972..53907616)
Genome browser
AA seq
601 aa
AA seq
DB search
MAKTVSPGAISSIMSNPNPDSSAVLPEIVVQVLDLKPLGNRYTFNASDGKSKLKAILQSS
FSSEVVNGNIQSLGLVRVTDYTLNDIPNKNEKYLIVTKCEAVSPPLEAEYKVEVKSENAG
IVLKPKQEVITKSAAQIIHEQNRNVAPAARMSMTRRVHPLASLNPYQGNWTIKVRLTAKG
TMRHYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFFDMFEMGKVYYISKGSLKVAN
KQFKTVQNDYEMTLNENSLVEEAVNEAAFIPETKFNFIPIDQLGPYVQQKELIDVIGVVQ
NVSPTMSIRRKIDNETVPKRDITIADDTKKTVVVSLWGGLATDLGQKLLDMADDSPVVAI
KSLRVSDFQGVSLSTVSKSIVEINPDSPDSQKLKSWYSSEGKETSMQSLGSTLSPSMKSG
GRSLYADRVTLDHITSNPSLGEDKPVFYSARACMSLIKTDQTMYYRACKTCNKKVTEELG
SGYWCQACQKTESDCSLRYILSAKFSDASGGAWFSLFSDEAEKIIGCPADELDNMKSQDD
VSDYQTQLKKATWVPHVFRLMVAPREYNNEKRQRITVKSVNPVDFAAESKLLLQEISSMK
A
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaacggtgagtccaggtgcgatttccagcatcatgtcgaatcctaatccggat
tcttctgctgttcttccggaaatcgttgttcaagtgctcgatctaaagcctctcggtaac
agatacacttttaatgcgagtgatggcaagagtaagctgaaggcaattctgcagtccagt
ttttcatcagaggttgtcaatggaaacatccagagcctcggtctcgttcgtgtcactgac
tacactctcaacgacattccaaacaagaacgaaaagtacttgattgtgacaaaatgtgaa
gcagtatctcctcctttggaggcagaatataaggtagaggtgaaaagtgaaaatgcaggt
attgtcttgaaaccaaagcaagaggttatcaccaaatcagcagctcaaatcatccatgaa
cagaacaggaatgtggctcctgctgcaagaatgtcaatgactagaagggttcacccactg
gcatccttaaacccctatcaaggaaactggacaattaaagttcgacttactgctaaagga
accatgcgccattacaagaatgcacgaggggaaggttgtgtctttaacgtggaactaact
gatgaggatggtactcaaattcaagcaaccatgtttaatgaggctgcaaggaagtttttt
gacatgtttgaaatgggaaaagtttattacatatccaaagggtctttaaaagtggctaac
aagcagttcaagactgtacagaacgattatgaaatgactttgaatgaaaattctctagtg
gaagaagcagtcaatgaagcggcttttatccctgaaaccaagtttaactttatcccaatt
gatcagttgggaccatatgtccagcagaaagaacttattgatgttattggtgttgtgcaa
aatgtatctccaacaatgagcattagaaggaaaattgataacgagacagtcccaaaacgt
gacataactattgcagatgacacgaagaagacagtagttgtgtctttgtggggtggtctt
gccacagatcttggtcaaaaacttttagacatggctgatgattcaccagtcgttgcaatc
aaatccttaagggtatccgattttcaaggggtatcattgtcaaccgtgagcaaaagcatc
gtagaaataaaccctgacagccctgattctcaaaagttgaaatcatggtatagctcagaa
ggcaaagaaaccagcatgcaatctcttggctcgactttgagcccttcaatgaaaagtggc
ggtagatcactctatgctgaccgcgtgacacttgaccatataaccagcaacccgtctttg
ggtgaagacaagcctgtgttttacagcgcacgagcttgtatgagtttgatcaaaactgat
caaaccatgtactaccgcgcatgcaaaacctgcaacaagaaagttaccgaagagcttggt
tctggttactggtgtcaagcatgccaaaagactgaatctgactgtagtttgaggtatatt
ttgtctgcaaagttttctgatgcaagtggtggagcttggttttctcttttcagtgatgaa
gccgagaaaataatcgggtgccctgctgatgagcttgataatatgaagtcacaggatgat
gtaagtgattaccaaacacaacttaagaaagcaacatgggtcccacatgttttccgattg
atggttgcaccacgagagtacaataatgagaaaagacaaaggattaccgtgaagtctgtg
aatccagttgattttgcagctgagtccaagctgttgctgcaggagatctcttcaatgaaa
gcttga
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