Helianthus annuus (common sunflower): 110915361
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Entry
110915361 CDS
T05101
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
han
Helianthus annuus (common sunflower)
Brite
KEGG Orthology (KO) [BR:
han00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
han03009
]
110915361
Ribosome biogenesis [BR:
han03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
110915361
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_CAF1B_HIR1
Beta-prop_VPS8
WD40_MABP1-WDR62_1st
WDR54
ANAPC4_WD40
Beta-prop_IP5PC_F
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_WDR75_2nd
Beta-prop_LRRK2
Beta-prop_WDR19_1st
VPS8_N
GCN5L1
DUF5984
Motif
Other DBs
NCBI-GeneID:
110915361
NCBI-ProteinID:
XP_022015732
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Position
16:complement(100589354..100595126)
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AA seq
444 aa
AA seq
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MEDEVVIASSSTDVGIGCWDLRSGAEHLRYRSCASPSHGLVSVAGRFLASSQLRDSSSGS
VLFWSWNKPQVEVKSFPAEAINPLACNSEGSYIVGGGVSGDIYLWEVATGRLLKKWHGHY
RAVTCLVFSMDQSLLISGAEDGSVRVWSLLMIFDEERQQRSGHLYEYSFTEHALPVTDIV
TGYGGSNAIIVSASQDRTCKVWSLARGTLLRNIVFPSVIDAVALDPGEHVFYAGGRDGKI
YIAELNSLGKSNSNYGLHIIGTLSDQSKAICSLAFALDGLQLVAGSEDGFVRVWDTKTHN
IIRVFKHAKGPVNNILVIRQPPALYPRTSANNQGLMARKQVSLPPPLEKFTSIDEHSDFS
IYIPPQPDYQRPCDATYATVDTMNKQINELQQRGSCGASEMEIERLKADNERSMQMIQQW
KKMYENLHQFCVGELLSGEGDTTV
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaagtagtcatcgcgtcttcgtccaccgacgtcggaatcggttgctgggac
cttcgttccggcgccgaacacctccgttatcgctcatgcgcctctccttctcacggcctt
gtatccgtcgccggaaggttcctcgcctcttctcagcttcgtgattcgtcttctggttct
gttctcttctggtcgtggaataagcctcaggtagaagtgaagagttttccagctgaagca
atcaatcctcttgcttgtaatagtgagggcagttacatagttgggggtggagtttctggt
gatatatatctgtgggaggttgcaaccggtagattactgaagaagtggcatggtcactat
agggctgttacatgcttggtgttttctatggatcagtcgcttctgatttctggggctgag
gatggatctgttcgagtctggtcgcttcttatgatatttgatgaagaacgacagcaaaga
tcagggcatctttatgagtatagtttcactgagcatgctttgcctgtaaccgatatcgtt
acaggctatgggggatctaatgcaattatagtgtccgcttcacaggatcgtacttgcaag
gtatggagtcttgctaggggaactttgttgagaaatattgtgttcccgtcagtgattgat
gcagttgcattggatcccggtgagcatgttttttatgctggtggtagagatggcaagata
tacattgcggaactcaattctctaggcaaatccaacagtaactatgggttgcatatcatt
ggtacattgtctgatcaaagtaaggctatatgctctttggcttttgcactagatggactt
caattggttgctggatcagaggatggcttcgttcgagtctgggacactaaaactcataat
attatacgtgttttcaagcatgcaaaaggtcctgttaacaatattcttgttatccgacaa
ccaccggctctttaccctcgaacatcagcaaataatcaaggtttaatggcaagaaagcag
gtgtcgttgccaccaccacttgaaaagtttacatcaatagatgaacactcggattttagt
atatacatccctcctcagcctgattatcaaaggccttgtgacgcgacctatgccactgtt
gacaccatgaacaagcagatcaatgaacttcagcaacgcggttcttgtggagcttctgaa
atggagatagaaagattgaaagcagacaacgaaaggtcaatgcaaatgattcagcagtgg
aagaagatgtatgaaaatctgcatcagttttgtgttggtgagcttttgagcggagaaggc
gacaccacggtttaa
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