Helianthus annuus (common sunflower): 110917001
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Entry
110917001 CDS
T05101
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03013
Nucleocytoplasmic transport
han03015
mRNA surveillance pathway
han03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110917001
09122 Translation
03013 Nucleocytoplasmic transport
110917001
03015 mRNA surveillance pathway
110917001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110917001
03041 Spliceosome [BR:
han03041
]
110917001
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110917001
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110917001
Spliceosome [BR:
han03041
]
Complex C
Other components
EJC/TREX
110917001
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110917001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
110917001
NCBI-ProteinID:
XP_022017318
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All DBs
Position
16:6039308..6044761
Genome browser
AA seq
360 aa
AA seq
DB search
MGFSVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRELA
YQICHEFERFSRHLPDLKVAVFYGGVNIKIHKELLKNECPHIVVGTPGRVLGLARDKELG
LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDP
MEIYVDDEAKLTLHGLVQHYIKLGEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKL
LVECNFPSICIHSGMSQEERLTRYKGFKEGLKRILVATDLVGRGIDIERVNIVINYDMPD
SADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKELPEQIDTSTYMPA
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgggattttcagtacaacacgagtgcataccacaagctattcttggaatggacgtcata
tgtcaagcaaaatccggtatgggaaaaaccgctgtttttgttctgtctacactacaacaa
atcgagcctgtcgcaggtcaagttgcagcccttgttctttgccacaccagagaactagct
tatcagatttgccatgagttcgaacggttcagtagacatttgcctgatcttaaagtcgct
gtcttttacggtggtgtgaacataaagatccataaagaactactgaagaatgaatgtcct
catattgttgttggaactcctggaagagtattaggtcttgctagagataaggaacttgga
ttgaagaacgttaggcattttattcttgatgagtgtgacaaaatgcttgagtcactcgac
atgagaagagacgtgcaggagatttttaagatgactcctcatgacaagcaagtaatgatg
ttctctgcaacactaagcaaggagattcgaccagtatgcaagaagtttatgcaagatcca
atggaaatttatgttgatgatgaagccaaattaactcttcacgggcttgttcagcattac
atcaaactgggtgaaatggagaagaaccgtaagctaaatgatcttctagacgcgttggac
tttaaccaagtagtcattttcgtcaagagtgtaagcagagccgccgagctgaataaatta
cttgtggagtgcaacttcccgtctatttgtatccattctggaatgtctcaggaagaaagg
ttgacacgctacaaggggtttaaagaggggttaaaaagaattctagttgcaactgattta
gttggaaggggcattgacattgagcgcgttaatatcgtcataaattacgacatgccagat
tctgctgatacgtatctgcacagggtgggacgagctggcagatttggcaccaaggggctt
gcaatcacttttgtagcatctgcatcggactccgatgttctaaatcaggtgcaggaaaga
ttcgaggttgatataaaggagctgccagaacaaatcgacacttcaacctacatgccagcg
taa
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