Helianthus annuus (common sunflower): 110917398
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Entry
110917398 CDS
T05101
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03013
Nucleocytoplasmic transport
han03015
mRNA surveillance pathway
han03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110917398
09122 Translation
03013 Nucleocytoplasmic transport
110917398
03015 mRNA surveillance pathway
110917398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110917398
03041 Spliceosome [BR:
han03041
]
110917398
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110917398
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110917398
Spliceosome [BR:
han03041
]
Complex C
Other components
EJC/TREX
110917398
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110917398
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
110917398
NCBI-ProteinID:
XP_022017655
LinkDB
All DBs
Position
16:96275761..96280460
Genome browser
AA seq
429 aa
AA seq
DB search
MGETEIKDNEYEEELLDYEEEDEKATDSAAVKVNGEAVKKGYVGIHSSGFRDFLLKPELL
RAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAAL
VLCHTRELAYQICHEFERFSTYLTDIKVAVFYGGVNIKIHKELLKNECPHIVVGTPGRIL
ALARDKDLALKSVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRP
VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSV
SRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVN
IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASAADSDVLNQVQERFEVDIKELPEQ
IDTSTYMPS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaacagagattaaggataacgaatacgaggaagagcttctagactacgaggag
gaggacgagaaggccactgattccgctgctgttaaagtcaacggcgaagccgttaagaag
ggctatgtaggcattcacagttccggattcagagattttcttttgaagccagagctactt
cgtgctattgtggattccggatttgaacatccttctgaagtgcaacacgagtgcatacca
caagctattctgggaatggatgttatctgtcaagcaaagtctggtatgggcaaaacagct
gtttttgttctgtcaacactgcagcaaattgagcccgttgctggtcaagtagctgctctt
gtcttatgtcacacaagagagttagcttatcagatttgccatgagtttgaaagattcagc
acatacctgactgatatcaaggttgcggtcttttatggtggcgttaacatcaaaattcac
aaggagcttctgaaaaatgaatgccctcacattgttgttgggacacccggaaggattctc
gcacttgctagagacaaagaccttgcgttgaagagtgtgaggcatttcatactagacgag
tgtgacaagatgcttgagtcacttgacatgaggagagacgtgcaagaaatcttcaagatg
actcctcatgataaacaagtaatgatgttttcggctacactcagcaaggagatccgccct
gtctgcaaaaagtttatgcaagatccaatggaaatttatgttgacgatgaagccaagttg
actctacatggtctcgtacagcactacatcaaattgagtgagctggagaagaaccgtaag
ctgaatgatctgctcgatgcattagatttcaatcaagtcgtgatatttgtcaaaagtgta
agcagagcagctgagctcaacaaattgcttgtggagtgtaatttcccgtcaatctgcatc
cattctggcatgtcccaggaagaaaggctgacacgctacaaggggttcaaggaagggcac
aagagaatcttggtggcaacagatttagtcggtaggggtattgatatcgaacgagtgaac
attgttataaactatgacatgccggattctgctgatacttatctccatcgtgttggaaga
gctggaagatttggaactaaaggtcttgcaatcacatttgtggcttcggctgctgactca
gatgttcttaatcaggttcaggagaggtttgaggttgatattaaagagcttcctgagcag
atcgatacttcaacttatatgccttcgtag
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