Helianthus annuus (common sunflower): 110917838
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Entry
110917838 CDS
T05101
Name
(RefSeq) endoribonuclease Dicer homolog 2
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
han
Helianthus annuus (common sunflower)
Brite
KEGG Orthology (KO) [BR:
han00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
han03036
]
110917838
Chromosome and associated proteins [BR:
han03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
110917838
microRNA pathway
RISC loading complex
110917838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
ResIII
DEAD
Dicer_dimer
Helicase_C
PAZ
SNF2-rel_dom
AAA_22
Cas3-like_C_2
SWI2_SNF2
dsrm
Thr_dehydrat_C
Motif
Other DBs
NCBI-GeneID:
110917838
NCBI-ProteinID:
XP_022017968
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All DBs
Position
16:107143918..107159882
Genome browser
AA seq
1392 aa
AA seq
DB search
MATHGSNAAVSESSDHQLSFARSYQIEALAQAIKENTIVFLETGSGKTLIAIMLLRHYAY
LLKKPSPYIAVFLVPTVVLVKQQAEYVRRHLDLKVEEYWGEKGVDFWNAADWKKQRDQNQ
LLVMTPDILRNALRHRFLTLDIIKVLIFDECHNAKKNHAYAIIMKEFYHRELLAGSSQLP
RILGMTASPVKAKGSSSSEEYWKQISELENLLRSKVYTCASESVLAEHIPFSNAKYTFYK
EMEIPCTFEEIKNTLSILREKYVLAIRTSTLLDSSKENATSRLLRLSKQFEFCLYELGIW
LAAKAAEAHSCEANDLYTWGTPDVRGEAIARDFCKDVHNILSSYIPPGWLVHHINKESVL
SHGFLTTKVVCLIESLAEYRHVNDMRCIIFVERVISAIVLKTLLCELYPKLFGWKTEYTA
GNNSVMQSQSRGAQNKIVDEFRKGTVNIIVATSILEEGLDVQSCNLVIRFDLSNTVCSFI
QSRGRARMRNSDFLLLIPSGDTETLEKVQNYLISGEIMRQESLNHASEPCAPLDGDIMNE
AVYHVESTGASLSLSSSISMVYFYCSRLPSDGYFKPYPRFEIDKEAGTCVIYFPKSCPLP
SVRVTGNVKMLKQLACLEACKELHKLGALTDYLVPDTVEKADIDAQEIAYDYVAEQVQYV
PPELVGRYGNDSNKEYHFYSIKLKRNFEYDIPLQDMVLGVNNELELDNDRLEFDLEVDRG
TIAVSITYIGTSFLTSHQIRTSYIFQVMVLRVLLDNAITKLKKFLEVITTKNNVTLFDYL
LFPSMGLNKSPPVIDWTSVNSVAFLYAKQHNCSLTGNYHHQIHTINGVVCSCSMENALVY
TPHNEHVYCTTKRLVGLNGNSSLQLKGEAITYKNYYKTRHGIDLQYGDESFFAARQLFVV
RNTLQKGRHHKEKETSNAGVELPPELCYILMSPIPITTFYSFSFVPSIMHRIESWLLALN
LKKMHLDCSPSYGNVPASKILEALTTKKCLEKFHLESLETLGDSFLKYAASQQLFKKFQG
QHEGILSSRREKVISNASLCRLGCNRNLPGFVRNKPFDPKTWVVPGDLSETFELGQMNLS
TERKVYIGNKRTLKEKVVADVVEALIGVFLSEGGEMAALSFMRWLGIKVDLVNTSYIREV
TLQPEKYINIEHLESLLNYTFNDASLLVEALTHGSYMLPEIPKCYQRLEFLGDAVLDYLI
TVHLYNKYPGMSPGMLTDLRSASVNNDCYAQSAFKIELHKHILHGSQALHQHIVKIMREI
DHLTLETTFGWESETSFPKVLGDVIESLAGAIFVDSGYDKDQVFNSIRPLLEPLVTPETL
KLHPVKELHDLCQKNHYEIKKTAKRTEDGTVWFTIEVESEGEVFKESCMASDKKMGERVA
SKNVLKRIKETI
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggctacccacggatccaatgctgctgtatctgaatcatctgatcatcaactctcgttt
gcgcgaagttatcagatagaagcattagctcaggcaattaaggagaacactatagtgttc
ttggagacgggatcaggcaagacgttgatcgcgattatgcttttacgtcactacgcttat
ctgttgaaaaaaccgtccccgtatattgctgtgttcttggtacccactgttgtattggtc
aaacagcaagcggagtatgtgagaaggcaccttgatttgaaagtggaggagtattggggt
gaaaaaggtgttgatttttggaatgctgctgattggaagaaacaacgagatcagaatcag
ctattggtcatgacccctgacattttaaggaatgcattgaggcatagattcttgactttg
gacattatcaaggtgttaatatttgatgaatgccacaacgcaaagaaaaatcatgcatat
gctatcatcatgaaggagttctatcaccgtgagttactggctggtagttctcagcttccg
aggatccttgggatgactgcttcacctgtgaaagctaaagggtctagctcaagcgaagag
tattggaaacagattagtgaacttgaaaacttactgcgttcaaaggtttatacatgtgct
agtgaatctgtactagctgaacacattccattttccaacgcaaagtatacattctacaag
gaaatggaaatcccgtgtacgtttgaggaaataaaaaatacattgtcgattctaagggaa
aagtatgttttggccataagaacttcaacccttttggactcttcaaaagaaaatgcaaca
agcagattgttgaggttatctaaacagtttgagttctgcttatatgagcttggcatttgg
ttagcagcaaaggcagcagaagcccattcatgtgaagcaaatgatctttacacttggggg
acgcctgatgttcgtggtgaggcgattgctagagatttctgtaaagacgtccacaacatt
ctctcatcttacatacctcctggctggttggttcatcatataaataaagaaagtgtgctg
agccatggcttccttacaacaaaagttgtgtgtttaattgaatcacttgctgaatatagg
catgtcaatgacatgagatgcataatcttcgttgagagggttatttcagcaattgtactc
aaaaccttgttgtgtgagctgtaccctaaactgttcggttggaaaacagaatatacagct
ggcaataactctgtgatgcagtcacagagccgtggtgctcaaaataagatcgttgatgag
tttcgcaaaggcactgtcaatataattgttgcaacatccattcttgaagaaggtttggat
gttcagagctgcaatcttgttattagattcgacctttcgaatacagtttgtagcttcatc
caatctcgaggccgtgctcggatgaggaactcggattttttacttttgattccaagtggc
gacacggaaactttggagaaggtgcaaaactacctaatcagtggagaaattatgcgacag
gagtctttaaatcatgcttcagaaccatgtgcaccgctcgatggtgacatcatgaatgaa
gccgtttatcatgttgaatctactggggcttctttaagccttagttccagcatatcaatg
gtttacttctattgctctaggctaccttctgatgggtactttaagccttatccaagattc
gaaattgataaggaagcaggaacatgcgttatatattttcctaaaagctgcccacttcca
agtgtgcgtgtgacaggaaatgtaaaaatgctgaagcaacttgcatgccttgaagcatgc
aaggaactgcataagcttggtgcattaacagattatcttgtcccagatactgtggagaaa
gctgatatcgatgcacaggaaattgcatacgactacgtagcagaacaagttcaatatgtg
ccacctgaacttgtgggtcgatatggaaatgattcgaataaagaatatcatttctactca
attaagttaaagaggaatttcgaatatgatattccactccaagatatggttcttggagtc
aacaacgagttggaactcgacaatgatcggttggaatttgatcttgaggttgatagaggc
acaattgctgtttcaatcacatatattggcacttctttccttacatctcatcagataagg
acatcatacatttttcaagtgatggtattaagagtacttctcgataatgccataacaaag
ttgaagaaatttcttgaagttattacaacgaaaaataacgttacgctatttgactatctt
ttgttcccttcaatggggttaaataaaagcccgccggtcattgattggacttccgttaat
tcggttgcattcctttatgcaaaacaacacaattgttcattaacgggcaattatcatcac
caaattcacacgatcaatggagtagtttgcagctgctcaatggaaaatgcattggtgtat
acgccccataatgagcatgtgtattgcaccacaaaaagattagttgggttaaatggtaat
tcgtctttgcaattaaaaggagaagccataacatacaaaaattactacaaaacacggcat
gggattgatttgcaatacggagatgaatcgttttttgctgctagacaactttttgttgtt
cgaaatactcttcaaaagggcagacatcataaggagaaagaaacaagtaacgccggggtt
gagctgcctcccgaactgtgttacattttgatgtctccaataccgataactacgttctat
tctttttcttttgttccatcaatcatgcataggattgagtcatggctccttgccttaaac
ctcaagaaaatgcatttagactgtagtccgtcatatggaaatgttcccgccagtaagatc
ttggaagcattaacaaccaaaaaatgcctcgaaaagtttcatcttgaatcattggaaact
ctaggggattcttttcttaagtatgctgctagccagcagctatttaaaaaatttcaaggt
caacatgaaggcatcttgagctctcgaagagagaaagtaatatccaatgcctcattatgc
agattgggatgtaaccgcaatctcccgggatttgtccgtaacaaaccatttgatccaaaa
acatgggtcgtgcccggggacctctctgaaacctttgagttgggacaaatgaatctttca
accgaaagaaaagtttatattggaaacaaaagaacactaaaggagaaagtagtagctgat
gttgttgaagcgttaatcggcgtttttcttagtgaaggtggagaaatggccgccttatct
tttatgaggtggcttggtattaaggttgacttagtcaacacatcatacataagggaagtg
acattgcaacccgagaagtatataaacattgaacacttggaatctttgctgaattataca
tttaatgatgcttctttactcgttgaggcactgactcatgggtcttacatgctacccgag
attccaaaatgttaccagcgtttagaatttcttggggatgctgttttggattatttaata
actgtacatttgtacaataaatatccgggaatgtctcctggaatgttgaccgatttaagg
tcagcttctgtaaataatgattgttatgcacagtctgcattcaaaattgaactccataaa
cacattcttcacggttcccaagcccttcatcagcatatagtcaaaatcatgcgtgagatt
gaccatttgaccttggaaacaactttcggatgggaatctgagacatcttttcctaaggta
cttggagatgttatagaatccttagctggggctatttttgtcgattcaggttatgataaa
gatcaagtttttaatagtattaggcctcttcttgagccattggtcacaccagagacctta
aagctgcatcctgtaaaagagttacacgatctttgtcagaaaaatcactacgaaattaag
aaaacagctaagcgtaccgaggatggtaccgtatggtttaccattgaagttgaatccgaa
ggagaagtgtttaaggagtcttgtatggcttcagacaaaaaaatgggcgaacgagttgct
tcaaaaaatgttttgaagcgtattaaggaaacaatatag
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integrated database retrieval system
