Helianthus annuus (common sunflower): 110918806
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Entry
110918806 CDS
T05101
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110918806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110918806
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
110918806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_11
TPR_1
TPR_2
TPR_17
TPR_16
TPR_12
TPR_CcmH_CycH
TPR_14
TPR_8
TPR_19
TPR_6
TPR_9
TPR_7
FAT
ARM_TT21_C
TPR_15
BTAD
TPR_NPHP3
DUF6584
Motif
Other DBs
NCBI-GeneID:
110918806
NCBI-ProteinID:
XP_022018784
LinkDB
All DBs
Position
16:111093638..111105303
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AA seq
1174 aa
AA seq
DB search
MGDEKDRQDDSVFTQLSEAVATNPDDPSAHFNLGLYLWDRIGEESKQKAAEHFVIAAKLN
PQDANAFRYLGHYYSKVSTDTQRALKCYQRALALSPQDSESGESMCDLLDKEGKESLEVA
VCRDASGKSPRAFWAFRRLGFLQVHQKKWSEAVQSLQQAIRGYPTSADLWEALGLAYQRL
GMFTAAIKSYGRAIELEESRVFSLIESGYVFMMIGSHRKGVEMFQQALQISPENLAAHYG
LGCALLELSKECISSGAFRWGASVLEEASKVAKAGTYLGKNVSCMWKLHGDIQISYAKCL
PWMDENPALETDKKALSASIMSWKNSCFSAALGAKHSYQQSLHLAPWQANIYTDIAITID
VINSFKDAEKHDLIQGELPEKMIIGGLLLESCNNEFWVALGCLSHHVEMKQHAFIRSLQL
DVSLAVAWAYLGKLYRKQGEKSLAQQAFDRARSIDPSLALPWAGMSADMSIRALKPDEAY
DCCLRAVQILPLPEFQMGLAKLAILSGQLSSSEVFGPIRQALHHAPQYPEAHNLLGLVCE
ARGDHLSAITSFRLARCAVNISSGDSQKLLDISINLARTFCKAGKAYEAVQECEELKKKG
VLDYEGLHIYALSSWKLGKNDQALSVVRILAARVKSLEPNLASLSISFICRLLYYISGRE
SVITSILKMPKSLFESSKVSFVVSAIHILDQSNQLEAVVSSSRSSLLTHDEITGMHFLIT
LSKLVKNSSEDCLGIQNGIYHLRKTLHKYPNSYMLRNFLGYLLISSNERKDTHLSTRCFT
VRCATSACPEDEGFKRAPEILGASVVACYTTGSLKHKYSFPACKDQSPYQHGSLKLLQKW
YHQEPWNKNARYLLILNYMQKAREERYPQHIHTGLERLTRLALSDESRHYKRFQLLICAS
ELNLQSGNVIGCINHATNASKISVSDAYLFFAHLLLCRAYAAEDNRPRLREEYVRCLNLK
TDYHIGLIGLKYIECLYGLAEANDNIIELKFEECSKDIKYSWNVWMAILKLVQGLIAVWN
RDFVGAEELFAQACSLNAYESCLFLCHGAVCMELARQQCNSDYLLLATGSLKKAKDTCGA
PLPILQLLLAQAEASLGYKGQWERYLQLEWSTWPPEMRPAEIFLQMHLLLGPLDDSMHST
SRTKHYQKNPLRWILQAIHLNPSCSRYWKALQNL
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacgaaaaggaccgtcaagatgactctgttttcacgcagttgagtgaagctgta
gccaccaacccagacgacccatcggctcatttcaatttgggtttgtacctgtgggaccgg
attggagaagaatctaagcaaaaggcagcagagcattttgtgattgcagcaaagctcaac
ccacaagatgcaaatgcttttaggtatttgggtcattattatagcaaagtttcaactgat
actcaaagagctctcaagtgttatcaaagagctcttgctctctctcctcaagattctgaa
tccggggaatcaatgtgtgatttgttggataaagaaggaaaagagagtttggaggttgct
gtctgtcgtgacgcttcagggaagtctccaagggcattttgggcatttcgtagactaggt
tttctacaggtccatcagaagaagtggtccgaagcagttcaaagtcttcagcaggccatc
agaggatatcccacatctgctgatttatgggaggccttaggtcttgcctatcaacgatta
ggcatgttcaccgcagctattaagtcatatggtcgagctattgagttggaggaatcacgc
gtgttctctttaattgagagtggatatgtcttcatgatgattggttcacatcgaaaggga
gttgagatgtttcaacaagctttacaaatatcacctgaaaatttagctgcacactacggt
cttggatgtgcgcttcttgagttatcaaaggaatgtataagttcaggtgcatttagatgg
ggagcttcagtattagaggaggcatcaaaagttgcaaaggctggtacatatttgggcaaa
aatgtttcatgcatgtggaagttgcatggtgatattcagatatcatatgcaaagtgtctt
ccctggatggatgaaaatcctgcgttggaaaccgataaaaaagctttatcggcttccata
atgtcatggaaaaactcgtgcttttcagctgcactgggtgccaaacactcctatcaacag
tctctgcatttggctccgtggcaagctaacatctacaccgatattgcaatcactatagat
gtcattaactcttttaaggacgctgagaagcatgatcttattcaaggggaattacctgag
aaaatgataatagggggattattactcgagagttgcaataatgagttctgggttgcattg
ggatgcttatcacatcatgtggaaatgaaacaacatgcttttatcaggtcgttgcagttg
gatgtatcattagctgttgcctgggcatatctcgggaagctttacagaaaacaaggtgaa
aagagtttggcccagcaagcatttgatcgggccaggagtattgatccttctcttgcgtta
ccatgggctggcatgtcggctgatatgtccattagggcgcttaagccagatgaagcttat
gattgctgtttacgggctgtgcagatactaccacttccagaatttcaaatgggtcttgca
aagcttgctattctttctggtcaactttcatcttcagaggtatttgggcccatacgtcag
gccttgcatcacgcaccccaatatcctgaagctcacaatcttctagggcttgtatgtgag
gcaagaggtgatcatctctctgctattacgtcttttaggttagcacgttgtgcagtcaac
atttcttctggtgattctcaaaaactccttgatatttcaatcaatttggcgaggactttc
tgtaaggctggcaaagcttatgaagcggtacaagaatgtgaagagttaaagaaaaaaggc
gttcttgattatgaaggtttgcatatatatgctttatcttcatggaaactcggcaaaaac
gatcaggctttgtctgtagtgagaattttagccgcacgcgttaaatcattggaaccaaac
ctcgcttctttatccataagttttatatgtagattactttattatatttccgggcgagaa
tcagttattacaagcattctgaaaatgcccaagagtttgtttgaaagttccaaagttagt
tttgtggtatccgctattcatattctcgatcaaagcaatcagcttgaggcagttgtttca
agtagtcgatcttcgcttctaactcatgatgaaattaccggaatgcattttttgataacg
ttaagtaaattggtaaaaaatagctcagaagattgtttggggattcagaatggaatatat
caccttagaaaaactctccataaataccctaacagttatatgctaaggaattttcttgga
tatttattaatatctagtaatgaacggaaagatactcatttgtctactagatgctttact
gtgaggtgtgccacatcagcgtgtcctgaggacgaaggtttcaaacgcgcacctgaaatt
ctcggtgcaagtgtggtcgcttgctatacaacagggagtttaaaacataaatactctttt
cctgcctgtaaagatcaatcgccatatcagcacggatcacttaaactactgcaaaagtgg
taccatcaagaaccatggaataaaaatgcgcgatatctgttaatccttaactatatgcag
aaggctcgcgaagagcgatacccgcaacatatacacacaggactcgaaagattaacacgt
ttggccctttcagacgaatctcgtcactataaaagattccaacttctaatttgtgcttct
gagttaaatttacaaagcggaaacgttatcggctgcataaatcacgctacaaatgcttca
aagatttccgtctctgatgcgtatcttttctttgcccacttgctattatgtcgggcctat
gccgcagaagataaccggccccgtttacgtgaagagtacgtgagatgtttaaatctgaaa
acagattatcatatcggtttgatagggttaaaatatatcgaatgtttgtatgggctagca
gaagcaaatgataatataatcgaattgaagtttgaagaatgttcgaaggatataaagtat
tcttggaatgtttggatggcgatattgaaattagttcaaggtttgattgctgtttggaat
agagattttgttggtgcggaagagttgtttgcacaagcatgttcgttaaacgcttatgaa
agctgtctgtttttgtgtcatggtgctgtatgtatggaacttgctagacaacaatgcaat
tcagattacctgttgcttgcaaccggaagtttgaagaaagctaaagacacttgtggggcc
cccttaccgatcttgcaactgttactagcacaagccgaagcaagtcttggatacaaaggt
caatgggaacggtaccttcagcttgaatggtcaacttggcctccagagatgaggccggct
gagatctttcttcaaatgcatttgcttttgggaccgttggatgacagtatgcattctaca
tcacgaacaaaacattatcagaaaaatccgttacgatggattcttcaagcgattcacttg
aatccgtcttgttcaagatattggaaagctttacagaatttgtaa
DBGET
integrated database retrieval system
