Helianthus annuus (common sunflower): 110920945
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Entry
110920945 CDS
T05101
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03013
Nucleocytoplasmic transport
han03015
mRNA surveillance pathway
han03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110920945
09122 Translation
03013 Nucleocytoplasmic transport
110920945
03015 mRNA surveillance pathway
110920945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110920945
03041 Spliceosome [BR:
han03041
]
110920945
03009 Ribosome biogenesis [BR:
han03009
]
110920945
03012 Translation factors [BR:
han03012
]
110920945
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110920945
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110920945
mRNA cycle factors
Stress granule specific factors
110920945
Spliceosome [BR:
han03041
]
Complex C
Other components
EJC/TREX
110920945
Ribosome biogenesis [BR:
han03009
]
Eukaryotic type
90S particles
Helicases
110920945
Translation factors [BR:
han03012
]
Eukaryotic type
Initiation factors
eIF-4
110920945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
TniB
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
110920945
NCBI-ProteinID:
XP_035842645
LinkDB
All DBs
Position
17:complement(18992715..19006001)
Genome browser
AA seq
408 aa
AA seq
DB search
MAGTSVVPANRGRRNTMVDDEKLVFETSKGVEPIMTFDQMGIKDDLLRGIYQHGFEKPSA
IQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQIVDTSSREVQALILSPTRELAAQTE
KQILAIGDFISIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRRTLRTRAIKL
LILDESDEMLSRGFKDQIYDVYRYLPPELQVCLVSATLPNEILEMTSKFMTDPVRILVKR
DELTLEGIKQFFVAVERENWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRENNFT
VSAMHGDMPQKERDAIMEEFRSGVTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIH
RIGRSGRFGRKGVAINFVKTDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaacgtcggtggtaccggcgaacagagggcggaggaacacgatggtggacgac
gagaagctggtgtttgaaacatcgaaaggagtggagccaatcatgaccttcgatcagatg
ggaattaaggacgatctcctccgtggaatctaccaacacggcttcgagaaaccttccgca
attcaacagagagctgtacgcccaattattgaaggccgtgacgtcattgctcaggctcag
tctggtaccggaaaaacctcaatgattgcccttactgtttgccagattgttgacacctct
tccagagaggtccaagcgttgattttgtcacctacaagagagcttgcagctcaaacagag
aaacaaatactggctattggtgatttcatcagcatacaagcccatgcatgcattggtgga
aaaagtgtcggtgaggacatcagaaagttagaaaatggagttcatgtcgtttctggaacc
cctggtagagtctgtgacatgatcaagagaagaacattgagaactagagccattaaattg
ctaattcttgatgaatctgatgaaatgttgagccgagggtttaaggatcaaatttatgat
gtttaccgataccttccaccagagcttcaggtttgtttggtgtctgctacacttcctaat
gaaatattggagatgactagcaaattcatgaccgatcctgttagaattcttgttaagcgt
gatgaattgactcttgagggaataaagcagttctttgttgctgttgaaagagaaaattgg
aagtttgatactctctgtgatctgtacgatactcttacaattacccaggctgtaatcttc
tgtaacacaaagcgaaaggtggattggttaactgagaagatgcgtgagaacaactttact
gtatcggcaatgcatggagacatgcctcaaaaggagcgagatgcgataatggaagaattt
cgatctggtgttactcgtgtcttgattaccacagatgtgtgggccaggggattggatgtt
caacaggtttctctggtgattaattatgacctcccaaataacagagagctttacattcac
cgtattggtcgatctggtcgttttggacgaaagggtgttgctataaatttcgtgaaaacg
gacgatatcaagattctaagagacatagagcagtattacagtacccagatagatgaaatg
cccatgaatgtggctgacttgatataa
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