Helianthus annuus (common sunflower): 110921052
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Entry
110921052 CDS
T05101
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110921052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
han03041
]
110921052
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110921052
Spliceosome [BR:
han03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110921052
Complex C
U5 SnRNP specific factors
110921052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_11
Motif
Other DBs
NCBI-GeneID:
110921052
NCBI-ProteinID:
XP_022021009
LinkDB
All DBs
Position
17:747145..755366
Genome browser
AA seq
2185 aa
AA seq
DB search
MANLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLFGKIDPRNFGDRAS
RGRPQGLDEKLNKSKKKKEREHSLSSSEAANNRQSKRRRLQEESVLTSTEEGVYQPKTKE
TRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDTLKNPDKKKDIEKLLNPIPNQV
FDQLVSIGRLITDFQDASGDGAGLNAANGEDALDDDVGVAVEFEENEEDDEESDLDIVQE
DEEEEDDVLDRDGNNAMQMGGGMDDEDSQEANEGMTLNVQDIDAYWLQRKITQAYEQQID
PQQSQKLAEEVLKILEEGDDREVETKLLVHLQFDKFSLIKYLLRNRLKIVWCTRLARAED
QEQRKQIEEEMMGRGPELVAILEQLHATRATAKERQKNLEKSIREEARRLKDESGGGAVD
RDRREIVDRDAENGWLNGQRLLLDLESISFHQGGLLMANKKCELPVGSYRNHSKGYEEVH
VPALKPKPLAADEKLVKVSAMPSWAQPAFEGMTQLNRVQSRVYETALFQADNLLLCAPTG
AGKTNVAMLTILQQIGLHMNEDGSFNHSDYKIVYVAPMKALVAEVVGNLSNRLKHYGVNV
MELSGDQSLTRQQIEDTQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGP
VLESIVARTVRQIETTKEHIRLVGLSATLPNYDDVALFLRVDLKKGLFHFDNSYRPCPLA
QQYIGITVKKPLQRFQLMNDICYEKVIGVAGKHQVLIFVHSRKETTKTARAIRDTALAND
TLGIFLKEDGASREILNEHTELVKSNDLKDLLPYGLAIHNAGMARADRQLVEELFAAGHI
QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQFDTVGE
GIIITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEVVLGTVQNAKEALNWLSYTYLY
IRMVRNPELYSLSSDALKRDPLLEGRRADLVHSAATILDKNNLVVYDRKSGYFQVTDLGR
IASYYYITHGTIATYNEHLKPTMSDIDLCRLFSLSEEFKYVTVRQDEKMELVKLLDRVPI
PIKENLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQ
LAEKALNLCKMVNKRIWSVQTPLRQFHGIKNDILMKLEKKDLAWERYYDLSSQELGELVR
APKLGRTLHRCIHQFPKLNLAAHVQPITRTILRVELTITPDFQWEDKIHGYVEPFWVIVE
DNDGEYILHNEYFLLKKQYIDEDHTISFTVPICEPVPPQYFIKVVSDRWLGSLSVLPVSF
RHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQEFKHFNPIQTQVFTVLYTTDDNVL
VAAPTGSGKTICAEFAVLRNHQKGPNEVMRAVYIAPVEALAKERYSEWSKKFGGLGLRVC
ELTGETATDLKLLEKGQVIISTPDKWDALSRRWKQRKHVQQVSLFIVDELHLIGGQNGPV
LEVIVSRMRYIASQGHNIRIVALSTSLANAKDLGEWIGATSHGLFNFPPSVRPVPLDIHI
HSIDIANFEARMQAMSKPTYTAVVQHAKNKKPAIVFVPTRKHTRMTAVDLMTYSIAESKY
PGAENRDTPLFLLQAEAELGPFIERIREPMLKETLKYGVGYLHEGLTTTDQDIVKTLFET
GCIQVCVMSGTMCWGVSLRAHLVVIMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLVDN
SGKCVILCHAPRKDYYRKFVYEAFPVESHLHHHLHDNLNAEVVVQVIANKQDAVDYLTWT
FMYRRLTQNPNYYNLQGVSQRHLSDHLSELVENTLSDLESSKCVAIEDDFHLSPLNLGMI
ASYYYISYTTIERFSSSVTSKTKLKGLLEILSSASEYELLPVRPGEEELIRKLINHQRFS
FENPKYGDPHVKANVLLQAHFSRQLVGGNLGSDQHEVLLSAGRLLQAMVDVISSNGWLSL
ALLAMEVSQMVTQGMWERDSVLLQLPHFTKELAKRCQDNPGRSIETVFDLVEMEDDERRE
LLQMSDSQLMDIARFCNRFPNIDLSYDVVDSENVRAGEDITLVVTLERDLEGRTEVGPVD
APRYPKSKEEGWWLVVGDTKTNQLLAIKRVSLQRKAKVKLDNITAPSEAGKKNLTLYFMC
DSYMGCDQEYSFTVDVKPNDDHARE
NT seq
6558 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatttgggcggtggtgccgaggcacatgcccgattcaaacagtatgagtaccga
gctaactccagtcttgtgttgacaacggattctcgcccgcgtgatactcacgagcccact
ggggagcccgagtctttgtttgggaagatagaccctagaaattttggtgaccgtgcttct
agaggaaggccgcagggtctcgatgaaaaacttaacaaatctaagaagaaaaaggaacgt
gaacattcactttcttcttctgaagctgcaaataatcgacagagcaaaagacggcgtctt
caagaagagagtgttctcacgtcaacagaagaaggtgtttaccagcccaaaacgaaagaa
actcgagctgcatatgaggctatgcttagtgtgatccagcagcagttgggtggtcagccg
ttgaatattgttagtggtgctgctgatgagattttggctgtgcttaagaacgatacgttg
aagaatcctgacaaaaagaaggatatagagaagctgttgaaccctataccgaaccaggtt
tttgaccaattggtttctattgggagacttataacagattttcaggatgcaagtggtgat
ggggctgggcttaatgctgcaaacggtgaagatgctcttgatgatgatgttggtgtagct
gttgaatttgaagagaatgaggaagatgacgaagagagtgatcttgatattgtacaagaa
gacgaggaggaagaagatgatgttttggacagagacgggaataatgctatgcaaatgggt
ggtggtatggatgatgaagattcacaagaagctaatgagggtatgacacttaatgttcaa
gacattgatgcttactggcttcagaggaagatcacccaagcttatgaacagcagatagat
ccacaacagagccagaagcttgctgaagaggtgttaaagattcttgaagagggtgatgac
cgtgaagttgaaactaagctattggtgcatttgcagtttgataaattcagcctcataaag
tatcttttaaggaaccgattgaagattgtgtggtgtacccgtttagcaagagctgaagac
caagaacagaggaaacaaattgaagaagaaatgatgggacgggggcctgagttggttgcg
atattggagcaattgcatgccacgagggcaacagcaaaagagagacagaagaacttggag
aaaagtataagggaagaagcaaggcggttgaaagacgaaagtggtggtggagctgttgac
cgagatcgaagggaaattgttgatcgtgatgctgagaatggttggttaaatggtcaaaga
ctgttgcttgatcttgagagcatttcatttcaccaaggtggtcttttgatggcaaataaa
aagtgtgagcttcctgtaggttcttataggaaccacagtaaaggatacgaagaagttcat
gttcctgcattaaagcccaaacctcttgctgctgatgaaaagcttgtaaaggtttcagcc
atgccaagttgggcccaaccggcttttgaaggaatgactcagttgaacagggttcagagt
agagtttatgagactgctttgttccaagcagacaatctattactgtgtgcccccactgga
gctgggaaaaccaatgttgctatgctcaccattcttcaacagattggtttgcatatgaat
gaagatggttcgtttaaccacagtgattacaagatagtctatgtggccccaatgaaagct
ctggtggctgaagtggtagggaatttgtctaatcgtttgaagcattatggcgtgaatgtg
atggagttgagtggggaccagtctttgacccgtcaacagattgaagatacacagattatt
gtcaccactccagagaaatgggatattataaccagaaaatcaggagaccgtacttatact
caactcgtgaagcttctgattattgatgaaatccatctcctgcatgataacagaggacct
gttcttgaaagtatcgttgcaaggactgttagacaaatcgagactacaaaagaacatatt
cggttggttggattatctgccacactcccgaactacgacgatgtggcgttatttttgcga
gttgacttaaagaaaggtctgtttcattttgacaatagttacagaccttgtccacttgct
caacagtatattggaatcacagtaaagaagccattgcagagatttcaattgatgaatgat
atttgttacgaaaaggtaataggtgtggctggtaaacatcaggtgcttatatttgtccat
tcaaggaaagaaacgacaaaaactgctcgtgcaattagagacactgctcttgctaatgac
acattagggatctttttaaaagaagacggcgcaagccgtgaaattctcaatgaacatact
gagctggtgaaaagcaatgatctgaaagatcttttgccttatggtttagcaattcataat
gcaggtatggctagggctgaccgtcaacttgttgaggaattatttgctgctggacacatt
caagtactggtttcaactgccactctggcatggggtgtgaacttgccagctcacactgtg
atcattaaaggaacccagatttataacccagaaaaaggtgcatggaccgagcttagtcct
ttggatgttatgcagatgttgggtcgtgcagggaggcctcagtttgacactgttggtgaa
ggaatcattataactggacatagtgagctgcaatattatctttcactgatgaatcaacag
cttccgattgaaagccagtttgtgtccaagttggctgatcaattgaatgcagaagttgta
cttggaactgttcaaaatgccaaagaagctctcaattggcttagttacacttacttatac
atccgtatggtgaggaatcctgaactttatagtttatcttctgatgctttgaagagagat
ccgttacttgagggtaggagagctgatctggtccactctgctgccacaatacttgacaaa
aacaacttggtggtgtacgatagaaaaagtgggtattttcaggtgactgatttgggtcga
attgcaagttattattacatcactcatggaactattgccacttacaacgagcatttgaag
cctactatgagcgatattgacctatgcagattgttttcactcagtgaggagttcaaatat
gtgacagtaagacaagatgaaaaaatggaacttgtaaagcttttggatcgtgttcctatt
ccaatcaaggaaaatttggaagagcccagtgcaaaaattaatgttctactccaagcgtat
atttctcagctaaagcttgaaggtctttcattgacttccgacatggtcttcataactcag
agcgcagggcgtttaatgcgggctctttttgagattgtgttgaaaagagggtgggcccag
ttagcggagaaagctttaaacttgtgcaaaatggtaaataagaggatctggagtgtacaa
actcctctacgccagttccatgggataaaaaacgatatattaatgaaactggagaaaaag
gatttagcttgggaaaggtattatgacttgtcatcacaggagttaggagagcttgtacgc
gccccaaagttagggaggactcttcaccgatgcatacaccagtttccaaaacttaaccta
gctgcacatgttcaaccaatcaccaggaccatactaagggttgaactcactatcactcca
gattttcagtgggaagacaagattcatggttatgttgaaccattttgggtcattgtagaa
gataacgatggggaatacatacttcataacgagtactttttgctgaaaaaacagtacatt
gatgaggatcacaccataagtttcaccgtcccgatatgtgaaccggtgccacctcagtac
tttattaaggttgtctcagacagatggcttgggtcattgtcagttttacctgtttcattc
cgccacttaattctacccgaaaagtacccaccaccaaccgaattgcttgatttgcagccg
cttcctgttaccgctttgagaaacccattatatgaagccctttatcaagaattcaaacac
tttaatcccattcaaactcaagtttttacggtgctgtataccactgatgacaacgtgtta
gttgctgcaccaacgggtagcgggaaaacaatatgcgcagaatttgccgttttaagaaat
catcagaaagggcctaacgaagttatgcgggctgtgtatattgctcctgttgaagctctt
gctaaggaacgatacagtgaatggagcaagaaatttggaggtctggggctgagggtctgt
gagttaaccggggagacagcaaccgatttgaaattacttgaaaagggacaggtgataatc
agcacacctgacaagtgggatgcattatcgcgtcgttggaaacaacggaaacatgttcaa
caagtcagtctttttattgttgacgagttgcatttgattggagggcaaaacggtccggtt
ttggaggttatagtgtccaggatgaggtacattgcaagccagggtcataatattcgaata
gtggcgttatcgacttcacttgcaaatgctaaagatttgggcgaatggatcggtgccacg
tcacacgggcttttcaattttcctccaagtgttcgtcccgttcctcttgatattcatatc
cacagcatagatatagctaacttcgaagcccgaatgcaagcaatgagcaaaccgacttac
actgctgttgtgcaacatgccaagaataaaaaaccagctattgtgtttgttcctaccagg
aaacacacccgtatgacagctgttgatctgatgacgtattcaattgctgagagcaagtat
ccaggtgctgagaatcgagatacacctttgttcttacttcaagctgaagctgagttgggg
ccgtttattgagcgtatccgggaacccatgttgaaggagacgttgaaatacggggtgggg
tatctacatgagggtttgaccaccactgaccaagatattgtcaagacactgtttgaaact
ggttgtattcaagtgtgtgtaatgagtggaactatgtgttggggggtctctctgcgtgcg
catttggtggttattatgggaactcagtattacgatgggcgcgaaaatgcccacactgat
tatccagtaactgatcttcttcagatgatgggccacgctagccggccacttgttgataat
tcggggaaatgtgtcatcttgtgccatgctccgcgtaaggattattataggaaatttgta
tatgaagcatttccagttgaaagccatttgcatcatcatttacatgataatttgaatgct
gaggtggtggttcaagtgattgcaaacaaacaagacgctgtggattatctgacgtggaca
tttatgtaccggaggctgactcagaaccctaattactacaatctgcaaggtgtaagtcaa
aggcatttatcagatcatctatctgaacttgtggagaacacgttgagtgatttggaatcg
agcaaatgtgttgcaatcgaggatgattttcacctttctcctctcaatctgggtatgatt
gcttcttattattacatcagttacacgacaattgaacggtttagctcttcagtaactagc
aagacaaagttgaagggtcttttggagattttatcttcagcttctgagtacgagttactc
ccggttcgacctggcgaggaggaattgatccgaaagttgattaatcatcaacggttttcg
tttgaaaacccaaaatatggggacccacatgtgaaggctaacgtgctgctacaagctcac
ttttcaagacaattggtaggtgggaatctcgggtcagatcagcacgaagtgctactatct
gctggtaggctgcttcaagcaatggtggatgttatttcaagcaatgggtggcttagttta
gcgttacttgcaatggaagttagccagatggtgacacaaggaatgtgggaacgggattct
gttctcttgcaactgcctcatttcactaaagagttggccaaacgatgccaagacaaccct
gggaggagtattgaaacagtgtttgatctggttgaaatggaagatgacgagaggcgggaa
ttgttacagatgtcagattcccagttgatggatattgcaaggttttgcaaccgttttccc
aatattgatctgtcgtatgatgtggtggacagtgagaatgtgagggcaggggaagatata
acactggtggttacacttgaacgtgaccttgagggtaggactgaggtggggccggtggat
gcccctagatacccgaaaagtaaagaagaaggatggtggctggtcgtaggtgatacgaaa
acgaaccagttgcttgcgatcaagagggtatcgttgcagaggaaggcaaaggttaaactt
gataatattactgctccaagtgaagccgggaagaaaaacttgactttgtatttcatgtgt
gattcttacatggggtgcgaccaggagtatagcttcactgttgatgttaaaccaaatgac
gaccacgcaagagaatga
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integrated database retrieval system
