Helianthus annuus (common sunflower): 110921088
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Entry
110921088 CDS
T05101
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110921088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110921088
03012 Translation factors [BR:
han03012
]
110921088
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110921088
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110921088
Translation factors [BR:
han03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110921088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
nSTAND3
HA2_N
ATPase
AAA_22
AAA_19
AAA_11
ABC_tran
PhoH
ResIII
Motif
Other DBs
NCBI-GeneID:
110921088
NCBI-ProteinID:
XP_022021050
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All DBs
Position
17:complement(73313645..73327799)
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AA seq
1186 aa
AA seq
DB search
MELGSLHLSTDFSCPKTLRTTSSLHRLTTVKFRPPSSHRYHHRRFVITSSASVPNISSTS
TGVAVHNLNNSTVNVNSSCNTSSLSTIYDHQKKISTVDDAGGVDYVPEFEFSVNHGAFGS
DVVDSWKWKLTSLLHSNDKQELVLKEKKDRRDYDQIASLASELGLYSRLYAKVVVVSKVP
LPNYRFELDDKRPQREVILSPGLHRRVDDHLEKYLSQKPKSIDGSQDNMFPTEIVNNNIA
NTGPFEQKESLPKNKAVSDDTLFRRSMQLSMEQQAWQKSSEGQKMLEFRRSLPAYKEKDA
ILNSISKNQVVIISGETGCGKTTQVPQFILESEINSMRGATCSIICTQPRRISAMSVSER
IAIERGEKLGENVGYKVRLEGMKGKNTRLLFCTSGVLLRRLLVDRDLKGVTHVIMDEVHE
RGIDEDFLLTVMKELLPCRPELRLVLMSATINAEIFSSYFNGAPVIQIPGITHPVRTYFL
ENILESTGYRLTADNQIDDYGQVWKLNKQTSNKRKSHIASSVEEALGSADYSEYSQQTQD
SLLCWNPNCINFNLIEYLLCNICENGKPGGILVFMTGWDDIISLKEKLQAHSVLGDPNRV
LLLTCHGSMSSSEQRLIFEKVDDGVRKIVLATNIAETSITIDDLVFVIDCGKAKEASYDA
LNNTPCLLPSWISKVSAKQRRGRSGRVQPGECYHLYPQCVYDSFADFQLPKILRTPLQSL
CLQIKSLNLGSISGFLSRALQSPDSLAVQNAVEYLKLIGALDEKENLTILGGYLAMLPME
PKHGKMLVMGAFLNCLDPILTIVAGLTVRDPFLAPLEIKELAQAAKAQFSHGFSDHLALV
RAYNGWKVAERKRIGHKYCWKNFLSPQSMKAIDSLRREFQSVLKSIRLIDNKASSYNTYS
YDENLVRAVICSGLYPGVCSVVHKDNSLSLKTMEDGQVSLHSKSVNARDFKIPYPWLVFN
KKVKVNSVYLQDSTAVSDSTLLLFGGSISIGDVQEGHMKMLGGYFEFFMEPAIAITYRTL
KRELDELFQTKLMNPKMNLQAHHELLSAIQLLLSGDQCSGRFVYNHQVIRSNSVPSIASP
PLPPPLVSATESGPGGDNSKSQLQTLLARAGYSTPIYKTNLSNNQFMAVCEFNGVQIMGR
PCNNKKQAEKDAASKALDWLLGGNVVTRETIDIISMVLKKSKSNQN
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggaactcggttcactccacctatccaccgacttttcgtgccctaaaacccttcgaaca
acctcctcattacaccgcctgaccaccgtcaaattccggccaccttcttctcaccgctac
caccaccgtcgcttcgtcattacttcctctgcttctgtccctaacatttcgtccacttca
actggtgttgctgtacacaacttaaacaactctactgtcaatgttaattcatcttgtaat
actagtagtttgtcaactatttatgaccaccagaagaagatatcgactgttgatgacgca
ggcggtgtggattatgttcccgaattcgagttttctgttaatcatggtgcttttgggtct
gacgtcgtagattcttggaaatggaagctaacatcattactgcacagcaatgacaaacaa
gagctggtgttaaaggaaaagaaggacaggcgtgattatgatcaaatagcatctctggca
agtgaattaggtttatacagccgtttgtatgccaaagtggtcgttgtcagcaaagtccca
ttgccaaattacagatttgaactggatgataagcggccacagagggaggtgattttgtct
cctgggttgcataggagagttgatgatcatcttgaaaaatatctttcccagaagcctaag
agcatcgatggctctcaagataacatgtttccaactgaaattgttaataataacattgct
aatactggaccctttgagcaaaaagagtcactcccgaaaaataaagctgtatcagacgat
accctttttcgaagaagtatgcaattgagcatggagcaacaagcttggcagaaatcttca
gaaggtcagaagatgcttgagttccgcaggagtctccctgcttacaaagagaaggatgct
atattgaattctatttcaaagaatcaggttgttatcatctcaggtgaaaccggctgcggg
aaaacaacacaagttccccagtttattctagaatccgagattaattctatgcgaggggcc
acatgtagcatcatttgtactcaaccccggagaatatctgctatgtctgtctctgaaaga
attgccattgaaagaggggaaaaattgggtgaaaacgttggatataaggttaggttagag
ggtatgaaaggaaagaacacccgcctgttgttctgtaccagtggcgttttattgaggaga
ttgttagttgatagagatttaaaaggcgtgactcatgttatcatggatgaggttcatgaa
cgtggaattgatgaagattttctgcttactgttatgaaagaattacttccttgccggcct
gaactaaggcttgtgttgatgagtgcaaccataaatgcggagattttctcttcttacttt
aatggtgctccggtgattcagataccgggtattacgcatcctgtacgtacctattttctg
gaaaatatcctggaatccaccggatacagattgacagctgacaatcaaatcgatgattac
ggtcaagtatggaaattaaataaacagacttcaaacaaaaggaagagccatattgcttca
tctgtcgaggaagcacttggatctgctgactacagtgaatacagtcaacagacacaagac
tctttgctctgctggaatcccaattgcataaatttcaacctcatagaatacctactatgc
aacatatgcgagaacggaaaacctgggggtattttagtttttatgaccgggtgggatgac
ataatctccttaaaggagaagctacaagctcactcggttttgggagatccaaatcgagtt
ttgttactgacatgtcatggttctatgtccagctctgagcagaggttaatatttgagaag
gtagatgatggagtgaggaagatagtgttggctacgaatattgcggaaaccagtattacg
attgatgacttggtttttgtcatcgattgtggtaaggccaaagaggcatcatatgatgcg
ctcaacaatactccttgcttgcttccttcttggatatccaaggtttctgctaaacaaagg
agaggaaggtccggccgtgttcaaccaggagaatgttaccatctatatccccaatgcgtc
tacgattcttttgctgattttcaattgccaaaaatactgcggactcctttgcaatccctt
tgtttgcaaatcaaaagtttgaatcttggtagtatttctggattcttatccagggcgttg
cagtcacctgactcgctagcggttcaaaatgctgttgaatatctcaagctaatcggtgct
ttggacgagaaggaaaatctgaccatattgggtggctacttggcaatgcttccaatggag
ccgaaacatggaaagatgcttgtaatgggtgcatttttaaattgccttgacccgatattg
accatcgtggctggtcttactgttagggatccttttctggcacctttggaaataaaagag
ttggcacaggctgctaaagcacaattctcccatggatttagtgatcatcttgctcttgta
cgggcatacaacggttggaaagtagctgaacgaaagcgaatcggtcataaatactgttgg
aaaaactttctctctccacaatcaatgaaagctattgattctcttcgaagggaatttcaa
tctgtgcttaaaagtatccgtcttattgacaacaaggcgagcagttacaacacttatagc
tatgatgaaaatctcgtccgtgcagttatctgttcgggattgtatccaggagtctgctct
gttgtgcacaaggataactcgttatcactaaaaacaatggaagacggtcaggtgtctcta
cattccaaatcggttaatgcacgtgattttaaaataccatacccatggctggtcttcaac
aaaaaggtcaaagtcaactctgtttaccttcaagattcaacagctgtatctgattcaacg
ctgcttttatttgggggaagcatttcaataggtgatgttcaggagggacacatgaaaatg
ttgggaggatactttgagttcttcatggaacccgcaatagcaataacatatcgaacttta
aaacgagagctcgatgagttattccagactaaattaatgaatccaaaaatgaacctgcaa
gcccaccatgagcttttatctgcgatacaattgctgctctcaggagatcaatgcagtggt
aggtttgtatacaaccaccaggtgatacgtagcaattcagtaccttctattgcctcacca
ccgctgccaccgcccctagtttctgcgacagaaagtggaccaggaggtgacaattccaaa
agtcaactccaaacattacttgctagagcaggctatagtacaccaatctataagactaac
ttgtcaaacaaccagtttatggccgtttgtgaattcaatggcgtgcaaatcatgggccgt
ccttgtaacaacaagaaacaagctgagaaagatgcggcttctaaggctttggattggctt
ttgggtggtaatgttgtgacgcgtgaaacgatcgacatcatatcaatggttttgaagaag
agcaaatcgaaccagaattag
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