Helianthus annuus (common sunflower): 110921636
Help
Entry
110921636 CDS
T05101
Name
(RefSeq) RNA polymerase sigma factor sigC isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
han
Helianthus annuus (common sunflower)
Brite
KEGG Orthology (KO) [BR:
han00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
han03021
]
110921636
Transcription machinery [BR:
han03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
110921636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
TRAP-gamma
Motif
Other DBs
NCBI-GeneID:
110921636
NCBI-ProteinID:
XP_022021678
LinkDB
All DBs
Position
2:complement(120142897..120148995)
Genome browser
AA seq
540 aa
AA seq
DB search
MGVGFRLNLKWGLSVQPRLSSTSSSLPSSTHASFKSKVVNYDMARVSLPVEGDSSYNDHV
SGNACSSSTSRILDTDYMETNSFKLKQIAVPASRILKTKRSVRSLLQDDKLTFLTSLQAK
KISQYRLLLENLVVLEDTFADSDVVTLEQDILVQLEKIGASKFLRTSFSEIPKYPLANNP
VNEETIKPIVPSTRKVERKSKRERTLKKVNEVCTVEFHSQAVNHKNSRRVNVSSRRLSNS
KSGRIKITRNEAELSRGVKMVANLERIRMMLEEETGPMVSFNSWAAAAGVDKKELLENLQ
FGWRCRDELLRSTRSLVIYLAKNYNGQGIAFKDLIQAGNVGVLQGAERFDRSRGYKFSTY
VQYWIKKSLLMLLSRHSREIRIPFTLSKAISKIQKARKALDKGDGRCPDDCEIAKFSGLS
LAKIESATKCLRVVGSINQTNAKFWEGTPDPTMMTPEEALMKEHMINEMYSRMEDLDARE
RKVLTLRFGLKGYQRKTLEEIGGFYGVSKEWIRRIERRALTKLKLDDEETLQSFRQYLYI
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcggtttcaggctcaatttgaaatggggtctctcagttcaacctcgtctctct
tccacttcctcatctctgccctcatccacacacgcttcctttaaaagcaaggttgtgaat
tatgatatggcaagggtgtctctccctgtggaaggagactcttcttacaatgatcatgtt
agcggaaatgcatgttcctcgtcaacttcccggatattggatactgattacatggaaacc
aacagttttaagttaaaacaaatagcagtgcctgcctcgcgcattttaaaaaccaagagg
agcgtccgcagtttgttacaagacgataaattaacattccttacaagcttacaagcaaaa
aagatatcacaatataggttactcttggaaaatcttgttgtgttggaggatacatttgct
gattcagatgtggtaacattagaacaagacatactggttcaattagaaaagattggagct
tcgaagtttctacgtacgtcattttctgaaatccctaaatacccattagcaaataaccct
gtaaatgaagaaaccatcaagcctattgtgccttctacaagaaaggtggaaagaaagtca
aaaagagaacgtacattaaagaaggtcaatgaagtttgtacagtggaatttcactcacaa
gcagtcaaccataagaactctagacgagtcaacgtttcttcaagaagactgtcaaattcg
aaaagtggaagaatcaaaatcactaggaatgaggccgagctatcacgaggggttaagatg
gttgctaatttggagaggattaggatgatgttagaagaagaaacgggccccatggttagt
tttaacagttgggctgcagctgctggagtagacaagaaagagttgcttgaaaacttgcaa
tttgggtggcgttgcagggatgagcttttgagaagtacgcgttcgttggttatttacctt
gcaaagaactacaatggtcaaggaatagccttcaaagacttaatccaggcaggaaatgtt
ggtgttcttcaaggtgcagaaaggtttgaccgcagtagaggatacaaattttcaacttat
gtacagtattggatcaagaaatcattgttaatgttgttgtctcggcattctagagagata
cgaatcccttttacgttgagcaaggctataagtaagatacagaaagcccgaaaagcacta
gataaaggtgatggaagatgcccggatgattgtgagattgccaaattcagtggtctttca
ttggctaaaattgaatcagctaccaaatgccttagagttgtcggttccatcaatcaaaca
aatgcgaagttttgggaaggtacacctgatccaacaatgatgactcctgaagaagctctt
atgaaggaacatatgatcaacgaaatgtacagccgaatggaagatttggatgcgcgggag
aggaaggtgttgactttaagattcgggctcaaagggtatcaaaggaagacactagaggaa
atcggggggttttatggtgtaagcaaagaatggattcgtcgaatagaaaggcgagcgtta
acaaaactaaaactggatgatgaagaaaccttgcaaagttttagacaatatttgtacata
taa
DBGET
integrated database retrieval system
