Helianthus annuus (common sunflower): 110923316
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Entry
110923316 CDS
T05101
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03022
Basal transcription factors
han03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110923316
09124 Replication and repair
03420 Nucleotide excision repair
110923316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
han03021
]
110923316
03400 DNA repair and recombination proteins [BR:
han03400
]
110923316
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
110923316
Transcription machinery [BR:
han03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110923316
DNA repair and recombination proteins [BR:
han03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110923316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
110923316
NCBI-ProteinID:
XP_022023136
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Position
17:1285276..1290300
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AA seq
767 aa
AA seq
DB search
MGHGENSGRPHKRNKYSSKEDHKAAAFDDEEAYYVEDFNDDDRDGDGEGKKRDFTKLELK
PDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS
VGLETETIIAVLNKLSKTKLPKEMIEFIHASTANYGKVKLVLKKNRYLVESPFPEVLKRL
LSDEVISRARIFNEGGDGFNVSRAIGEIEGTHDELLNEAQLAAVAEEKEAHSFEIDPSQV
ENVKQRCLPNALNYPMLEEYDFRNDTINPDLEMELKPQAQPRPYQEKSLSKMFGNGRARS
GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSNIRDENICRFTSD
SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV
ISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA
MKLRKPMIYGATSHIERTKILEAFKTSKEVNTVFLSKVGDNSIDIPEANVIIQISSHAGS
RRQEAQRLGRILRAKGRLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS
FKVITSLPPSDAGSELSYHRLEDQLSLLGKVLSAGDDKLGLEILEDDTDDIALQKARARR
LMGSMSAMSGAKGMVYHEFRTGQKGGFGKSKPKDPAKRHQLFKKRFV
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgggtcacggtgagaacagtgggagacctcataagaggaacaaatattcatccaaggag
gatcataaagctgcagcttttgatgatgaagaagcatattatgttgaggactttaatgat
gatgatcgagatggtgatggagaaggaaagaagagagattttacaaagctggaacttaaa
ccagatcatgccaatcgcccgttatgggcgtgtgcggatggacggatctttcttgagacg
ttttcgccgttgtataaacaagcatatgattttcttattgctatcgcagaacctgtctgc
aggcctgaatcgatgcatgagtacaacctcactccgcactcactttatgccgccgtatct
gtcggtttagaaaccgaaacaatcattgctgttttgaacaagctttcgaaaaccaagctt
ccaaaagagatgattgagtttattcacgcttctacagcaaattacgggaaagtaaagctt
gtacttaagaagaatcgatacttagttgaatctccattccctgaggtattgaagagattg
ttaagtgatgaagtgatatcgcgagcgaggatttttaacgagggaggagatggattcaat
gttagtagagcgattggtgaaattgaaggtacacatgacgagttgctaaatgaagcacag
ctggcggctgtagctgaagaaaaagaagctcattcttttgaaattgatccttctcaggtg
gaaaatgtaaagcagagatgcttgccaaatgctttaaactatcccatgttggaagaatat
gatttccgcaatgacactatcaatccagaccttgagatggaactaaaaccgcaagcacaa
ccacggccttatcaagaaaagagtcttagcaagatgtttggaaacggcagagcaagatct
ggcatcatcgtcttaccctgtggtgccggaaagtcattagtgggtgtttctgcagcctgc
agaataaagaaaagttgtctctgtttagcaacgaatgctgtgtcggttgaccaatgggcc
tttcagttcaaactatggtcaaacattcgggatgaaaacatttgtcgttttacatccgat
agcaaagaaagatttcgtggaaacgctggagttgttgtgacgacctataacatggttgct
tttggcgggaaacgatctgaagaatccgaaaagatcatcgaggaaatacgaaaccgagaa
tggggtttgctactcatggacgaggtgcacgtggttcctgcacacatgtttcgtaaagtc
attagcatcactaaatctcattgcaagcttgggcttactgctacacttgttagagaggac
gaaagaattacggatttgaattttcttatcggtccgaagttgtatgaagcaaattggttg
gatttagtcaagggcggattcatcgcaaacgtacaatgtgccgaagtgtggtgtccgatg
accaaagagttttttgctgaatatttaaagaaggaaaattctaagaagaaacaggctcta
tatgtgatgaaccctaacaagtttagagcttgcgaatttcttattagatttcatgagcag
caacgtggcgataagataattgtttttgccgacaatcttttcgcactcactgaatacgca
atgaaacttcgcaaaccgatgatttatggtgccacaagtcatattgaaagaacaaagata
ctagaggctttcaagactagcaaggaagtcaacactgttttcctctcgaaggttggtgat
aattcgatcgatattcctgaagcaaatgtgattattcaaatttcatcacatgctggttca
aggcgtcaagaagcccaacgtctcggacgtattctcagggcaaagggtcgtctccaggat
agaatggcgggaggaaaagaggaatacaacgcctttttctactcgctagtatctacagat
acacaggaaatgtattactcaactaaaaggcagcagtttctaatcgatcagggttacagt
tttaaggtgattacaagtttgcctccatcagatgcagggtcagagttgagctatcatcgt
ttagaagatcaactttctcttcttggaaaggtgttaagtgctggagatgataaattaggt
ttggaaatactggaagatgatacagatgacatagcacttcaaaaggcgcgtgcacgtcgc
ctcatgggttccatgagtgccatgtcaggagctaaagggatggtctatcatgagttcagg
actggacagaaaggaggcttcggaaagagcaagccgaaggatccagcaaaacgacatcaa
ctgttcaaaaagcgttttgtatga
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