Helianthus annuus (common sunflower): 110926235
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Entry
110926235 CDS
T05101
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110926235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110926235
03012 Translation factors [BR:
han03012
]
110926235
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110926235
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110926235
Translation factors [BR:
han03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110926235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
R3H
HA2_C
OB_NTP_bind
HA2_N
Ank_2
nSTAND3
Ank_5
ATPase
AAA_22
ResIII
AAA_19
Ank
ABC_tran
Rad17
PhoH
Ank_3
AAA_7
T2SSE
NANM
Sigma54_activat
DUF5077
Motif
Other DBs
NCBI-GeneID:
110926235
NCBI-ProteinID:
XP_022025681
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All DBs
Position
17:complement(20495540..20502390)
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AA seq
1200 aa
AA seq
DB search
MEPATDRIPPEAKSMEPASLPEKCRGRSKTSRAAKRVRNKNYKKRKQEARKISDETRNRF
QQILDDFHKSNDEEYTFDASISNYERAEVHKLWRAMGMKSQSSGVGANRRATLYKIKVKV
KVKGKVKVKGKVKVKVPAQAQTKNKTKSKNTEAKHPVTSFAFSEEGKTVLKDFFSFYPPG
NHKEDEKIVVTSSKRANNIRMRTDDMFCKPRMEKARVLKKFQSFVASMQSDPKLKQITEV
RSKLPIASFKDVITSTIESNQVVLISGETGCGKTTQVPQYLLDYMWSKGEVCKIVCTQPR
RISAVSVAERIANERGESIGLSVGYKIKLDKKGGKESSIVFCTNGILLRILVQAGNSLAG
KDKSAEMVKDAFPDITHIVVDEIHERDRFSDFMLTIIRDILPLYPHLRVVLMSATLDAER
FSRYFGGCPIIRVPGFTYDVKKFYLEDVLLLVKTNARSLDRTSETNVSEKSKLTEEYKRA
LDEAINIAWSSDELESLLDIVSMGEGLDVSNYQHSVTGVTPLMVLARKGRIGDICMLLSF
GANCHLQDNEGKTALSWAEHADQKEASEILRKHLNADLEEGKLLLDRYLKDVNPELVDIV
LIEQLLRKICTESEQGAILVFLPGWDEIHRLQQKLLSSDFFKDSCKFLIRVLHSMVSSTE
QKKVFIRPPHGCRKIVLSTNVAETSVTIDDVVFVIDSGRVKEKSYDPLLKVSTLQSSWIS
KANAKQRAGRAGRCQPGICYRLYSKLRAASLMEFQVPEIKRTAIEELCLQVKLLNRSCKI
EDFLEKTLDPPVSLAIYNAITVLQDLGALSPDEELTELGEKLGSLPVHPLTIKMLLFAIS
MNCLEPALTLACANDFRDPFVFPMSPDGKTKANAAKSELASLYGGHGDQLAIIAAFECWK
NAKQMGKEAKFCSQYFVHAGVMRMLCSMRQQLRRELQTNGFFPRNSHRLSENSQDGGIIN
AVLVAGLYPKVGRLLLPSAKSKKYVINDVGNQKVMLSRQSVNSRITLEKKDVDPLVIYDE
VTRSDMGFSIKKCSFIGALSLLLLATEIAVAPINNDNETTSEEGSNERREDEFMSNPDTA
VEVVADRWLSFKSTALDAARICCLRERLSDAILFKTTHLGKDLPRVLAASVAAIAKVLSC
DGVAGINEIKVAQQGDNVIMAGSGSDDFLRSLLSNALKHRVMNPKGGSRKRSYEEAIMMI
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggaacctgctaccgatcggattccaccggaagcaaaatccatggaacctgcttcatta
ccggagaaatgtcgaggacgctcaaaaacatctcgtgctgctaagagagtaagaaataaa
aactataaaaagcgaaagcaagaagcccgtaagatttcggatgagacccggaatcgtttt
caacaaatacttgatgactttcacaaatccaatgatgaagagtacacatttgatgccagc
atttcaaactatgaacgtgctgaggtgcacaagttatggagagcaatgggtatgaagtca
caaagttctggagtaggggctaatagacgcgctacactttacaagatcaaggtcaaggtt
aaggtcaagggcaaagtcaaggtcaagggcaaagtcaaggtcaaggtcccggctcaggcc
cagaccaagaacaagaccaagtcaaaaaatacagaagcaaaacacccggtcacatctttt
gcattttcagaagaggggaaaacagttttaaaggactttttttctttttatccacctggc
aatcacaaagaggatgaaaagattgttgtcacgtctagtaaaagagctaataacatacga
atgagaactgacgatatgttctgtaaacctcggatggaaaaggctcgagttttaaagaag
tttcagtcgtttgttgccagtatgcaatcggatcccaagttaaaacagatcactgaagta
aggtccaaacttccaattgcatccttcaaggacgttattacatcgacaatagaatccaat
caggtagttctcatatcgggcgaaactggttgtgggaagacaacacaggtgcctcaatat
ttgttggattatatgtggagtaaaggtgaagtatgtaagatagtctgcacccagccacgg
agaatctctgccgtttcagttgctgaaagaatagctaatgaaagaggtgaatctattgga
ctgagtgttggatacaagataaagttggataagaaaggtggaaaggagtcatccatcgtg
ttttgcacgaatggaatcttgttgaggattttggtacaagctggtaacagtttagctgga
aaagataagtcagcagagatggtcaaagatgcatttcctgacatcactcacatcgttgtg
gatgaaattcatgaaagggaccgattctctgattttatgctaacaatcattagagatata
cttcccttgtatcctcatctacgcgtggtattgatgagtgctaccctcgacgctgaacga
ttttctcggtactttggaggctgtccaatcatacgtgtcccggggttcacttacgatgta
aaaaagttctacctggaggatgtacttttgcttgtgaaaacaaatgctcgttctcttgac
cgcacttcagaaacaaacgttagcgagaaatccaaattaaccgaagagtacaaacgtgcc
cttgatgaggctattaatatagcttggtcaagtgatgagctggaatccttattagacatt
gtttcaatgggtgaaggattagacgttagtaattatcagcattcggtgacaggtgtcaca
ccattaatggtcttagctagaaaaggaagaatcggtgatatctgcatgcttctttctttc
ggtgctaattgtcacttacaagataacgaaggaaaaaccgcgctgtcatgggccgaacac
gcggatcaaaaagaagcttccgagattttacggaaacatctaaacgctgatctggaagag
ggaaagctattgcttgatagatatttgaaagatgttaatcctgaattagttgatattgtt
cttatcgaacaattactgaggaaaatatgtacggaatctgaacaaggggctattctcgtc
tttcttccagggtgggatgaaatacatagattacaacagaagttactttctagtgatttt
tttaaagattcgtgcaagtttttgataagggttcttcattccatggtctcctctacagaa
caaaagaaagtttttataagaccgcctcacggttgcaggaaaattgttctttcaacgaac
gtagctgaaacatccgtcacaattgatgatgtcgttttcgtaattgatagtggaagagtg
aaagaaaaaagttacgatccacttttgaaagtctcgacgttacaatcttcttggatttct
aaagcaaatgcgaagcaacgtgcagggcgggcagggcgatgccagcctggaatatgttat
cgtctttattcgaaacttcgggcagcttcgctaatggagtttcaagtgcccgagattaag
agaacagcaattgaagaattgtgtttgcaggtgaagcttcttaaccgaagttgcaagata
gaagattttttggaaaaaacattggaccctcccgtttctctagccatatataatgcgatt
acggttcttcaagatcttggagctttatcacctgatgaagaacttaccgagcttggtgag
aaactcggttcgctcccggttcacccattaacaatcaagatgcttctttttgctatatca
atgaactgccttgaaccagctttgactttagcgtgtgcaaacgactttagagaccctttc
gtcttcccaatgtcacctgatggtaaaacaaaagcaaatgccgctaaatctgagctggca
tcgttatacggtggccatggtgatcaattggcgataatcgcagcttttgaatgctggaaa
aacgccaaacaaatgggtaaagaagccaagttttgttctcagtatttcgtgcatgctggt
gttatgaggatgttatgttcaatgcgtcagcaacttcgacgtgaacttcaaaccaacgga
ttttttccaagaaattcacataggttgagtgaaaattctcaagatggtggaataattaat
gcggttcttgttgctggtttgtatcctaaggtaggaagattacttctacctagtgcaaag
tcgaaaaagtatgttataaatgatgttggtaatcagaaggttatgttgagtcgacagtcg
gttaattctaggataacccttgagaaaaaagacgttgatcctttggtgatttacgacgag
gtaacacgtagtgatatgggtttcagtatcaagaaatgcagttttatcggcgcactctct
ttgttattgctagctactgaaattgctgttgctcctattaataacgataacgagacgact
tctgaagaaggtagtaatgaaagacgtgaagatgaatttatgtctaatcctgatactgcg
gttgaagttgttgctgacaggtggctttcgtttaagtcaacagctcttgatgctgctcgg
atttgttgtttgagagaaagattgtctgatgcaatattgttcaagaccacacatctgggg
aaagatctacctcgcgtacttgcagcctctgtcgctgcaatagccaaggtgttatcttgt
gatggcgttgctggtattaatgaaattaaggttgctcagcagggagacaatgtgataatg
gcgggttcaggttcagatgactttcttagatcgcttttatccaacgctttaaaacacagg
gtgatgaatccaaagggaggttctcgcaaacgctcttatgaagaggctatcatgatgata
tag
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integrated database retrieval system
