Helianthus annuus (common sunflower): 110926236
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Entry
110926236 CDS
T05101
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110926236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110926236
03012 Translation factors [BR:
han03012
]
110926236
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110926236
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110926236
Translation factors [BR:
han03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110926236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
R3H
HA2_C
OB_NTP_bind
Ank_2
nSTAND3
Ank_5
ATPase
AAA_19
Ank
ResIII
AAA_22
HA2_N
Ank_3
Rab3-GTPase_cat
SRP54
NANM
AAA_25
AAA_7
T2SSE
Rad17
NPHP3_N
DUF3391
ABC_tran
AAA_11
Motif
Other DBs
NCBI-GeneID:
110926236
NCBI-ProteinID:
XP_022025682
LinkDB
All DBs
Position
17:complement(20412932..20501515)
Genome browser
AA seq
1196 aa
AA seq
DB search
MEPASLPEESRPQKRSRAEKRKENKKQLQEARRISDETRNRFQQILDDFHKSNDKEYTFD
ASISNYERAEVHKLWRAMGMTSQSSGAGANRRVTLYKIMAKVKRKPRGSAWTQPGTQTKS
DNTEVKSPVMSFAFSEEGKTVLKDFFSFYSPGDHKEDEKIAVTSSENANKTPMRNDDMFC
KPRTTKGQVEKKFQSFVARMQSDRNLKQITENRSKLPIASFKDVITSTVESNQVVLISGQ
TGCGKTTQVPQYLLDYMWSKGEECKIVCTQPRRISAVSVAERIASERGEAIGQSVGYKIK
LDTKGGRRSSVVFCTNGVLLRILVHAGNTLAGKEKSAKTVKDAFPDITHIIVDEIHERDR
FSDFMLTIIRDILPIYPHLRVVLMSATLDAERFSQYFGGCPIICVPGFTYDVKRFYLEDV
LLLVKSESTNARSLVGTSNAKISAKSELPEDYKRALDEAINIAWSSDELEFLLDIIGTMG
EGLDVSNYQHSVTGVTPLMVLARKGRVGDICMLLSFGANCHLQDNEGKTALSWAQHAGQK
EVSEILQKHLNSTELDTEEEKRLELDTEEEKRLLDRYLKDVNPEVVDIILIEQLLRKICT
ESEEGAILVFLPGWDEIQKLNDKLLSSNFFNNASKFLILPLHSMVPSIDQKKVFVRPPHG
CRKIVLSTNVAETSVTIDDVVFVIDSGRAKEKSYDPFIRVSTLQTCWISKANAKQREGRA
GRCQPGICYHLYSKLRAASLAEFQEPEIKRTPIEELCLQVKLLNPDCKIEDFLKKTLDPP
VSLAIHNAITVLQDVGALSPNEELTKFGEKIASIAVHPVTIKMLLFAISMNCLDPALTLA
CANDFRDPFIFPMSLAGKSEANAAKSKLASVYGGHGDQLAIIAAFECWKNAKERGQEARF
CRKYFVAAGGMRMLSAMREQLRRELCMNGFIPKDSSRLSENSQDKGIINAVIVAGLYPRV
GRLFLDGRAKRYISDVNEQKVMLGRQSVNSRVTLKKKKVDPLVIYDEVTLGDMGFAIKKC
SIIGPLSVLLLATEIAVAPINDDNETVSEDGNKERHEDEFMSNPDTAVEVVADRWLSFKS
TALDAAQICCLRERLSDAILFKITHLGKDLPPVLAASVAAIAKVLSCDGLAGISEMIGEN
GKISGLSTLLNNKVKKRKIYKPKSREYKPWRPSENQHPNCDAPSGSSRKRGREDMA
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggaacccgcctcattaccggaggagtctcgaccccaaaaaagatctcgtgctgaaaaa
aggaaagaaaataaaaagcaactgcaagaagcccgtaggatttcggatgagacccggaat
cgttttcaacaaatacttgatgactttcacaaatccaatgataaagagtacacatttgat
gccagcatttcaaactatgaacgtgctgaggtgcacaagttatggagagcaatgggtatg
acgtcacaaagttctggagcaggggctaataggcgcgttacactttacaagatcatggcc
aaggtcaagcgcaagcccaggggctctgcttggacccaacccgggacccagaccaaatcc
gacaatacagaagtaaaaagccccgtcatgtcttttgcattttcagaagaggggaaaaca
gttttaaaggactttttttctttttattcacctggcgatcacaaagaggatgaaaagatt
gctgtcacatctagcgaaaacgctaataagacaccaatgagaaatgatgatatgttctgt
aaacctcggacgacaaagggtcaagttgaaaagaagtttcagtcgtttgttgccaggatg
caatcggatcgcaacttaaaacagatcactgaaaataggtcgaaacttccaattgcatcc
tttaaagacgttattacatcgacagtagaatccaatcaggtagttctcatatctggccaa
actggttgtgggaagacaacacaggtgcctcaatatttgttggattatatgtggagtaaa
ggtgaagaatgtaagatagtctgcacccagccacgtagaatctctgcggtttcagttgct
gaaagaatagccagtgaaagaggtgaagctattggacagagtgttggatacaagataaag
ttggacacgaaaggcggaagacgttcatctgttgtgttttgcacgaatggagtcttgttg
aggattttggtacatgctggtaatactttagctggaaaagaaaagtcagcgaagacggtc
aaagatgcatttcctgacatcactcacatcattgtggatgaaattcatgaaagggaccga
ttctctgattttatgctaacaatcattagagatatacttcccatttatcctcatctacgt
gtggtattgatgagtgctacactcgatgctgaacggttttctcagtactttggaggctgt
ccgatcatatgtgtaccggggttcacctacgatgtgaaaaggttctacctggaggatgta
cttttgcttgttaagtcagagtcaacaaacgctcgttctcttgtcggcacttcaaatgca
aaaattagcgcgaaatccgaattacccgaagattacaaacgtgcccttgatgaggctatt
aatatagcttggtcaagcgatgagctggaattcttattagacattattggtacaatgggt
gaaggattagacgttagtaattatcagcattcggtgacaggtgtcacaccattaatggtc
ttagctagaaaaggaagagtcggtgatatctgcatgcttctttccttcggtgctaattgt
cacttacaagataacgaaggaaaaaccgcgctgtcgtgggctcagcacgcgggtcaaaaa
gaagtttccgagattttacaaaaacatttaaactcaaccgaactagacacggaagaggag
aagcgattagaactagacacggaagaggagaagcgattactcgatagatatttgaaagat
gtaaatcccgaagtagttgatattatccttatcgaacagttattgagaaaaatatgtacg
gaatccgaagaaggggctatacttgtgtttcttccggggtgggatgaaatacaaaaatta
aacgataaattactctcgagtaatttttttaacaatgctagcaagtttttgatattgcct
ctccattctatggtcccgtccatagaccaaaagaaagtttttgttagaccgcctcatggt
tgccggaaaattgttctttcaacgaacgtagcggaaacgtccgtcacaattgatgatgtc
gtttttgtaattgatagtggaagagcgaaagaaaaaagttatgatccgtttattagagtc
tcgacgttacaaacttgttggatttctaaagcgaatgcgaagcaacgagaaggacgggca
gggcggtgccagcccggaatatgttatcatctttattcgaaacttcgcgcagcttcacta
gcggagtttcaagagcccgagattaagagaacacctattgaagaattgtgtttgcaggtg
aagcttctcaacccagattgcaaaatagaagattttttgaaaaaaacgttggacccgcct
gtttccctagccatacataatgcaattacggttcttcaagatgttggagccttgtcacct
aatgaagaacttaccaagttcggtgagaaaatcgcttcgatcgcggttcatccagtaaca
atcaagatgcttcttttcgctatatcgatgaactgccttgacccggctttgactttagct
tgtgcaaacgactttagagaccctttcatcttcccaatgtcactcgccggtaaatcggaa
gcaaatgccgctaaatcgaagctggcgtcggtatatggcggccatggtgatcaattggcg
ataatcgcagcttttgaatgctggaaaaacgccaaagaaaggggtcaagaagccaggttt
tgtcgtaaatattttgtggctgctggtggtatgaggatgttatccgcaatgcgtgagcaa
cttcgacgtgaactctgtatgaatggatttattccaaaagattcatctcggttgagtgaa
aactctcaagataagggaataattaacgctgttattgttgcgggtttatatcctagggtc
ggaagattatttcttgatggaagggcgaaaaggtatataagtgatgttaatgagcagaag
gttatgttgggtcgtcagtcggttaattctagggtaacccttaagaaaaagaaggttgat
ccgttggtgatttacgatgaggtaacacttggtgatatgggtttcgctatcaagaaatgc
agtattattggcccgctctccgtgttattgctagctaccgaaattgctgttgctcctatt
aacgatgataacgagacggtttctgaagacggtaataaagaaagacacgaagatgaattt
atgtctaatcctgatactgcggttgaagttgttgctgacaggtggctttcgtttaagtca
acggctcttgatgctgctcagatttgttgtttgagagaaagattgtcggatgcgatattg
tttaagatcacgcatctgggaaaagatctacctccagtacttgcagcctccgtcgctgca
atagccaaggtgttatcttgtgatggccttgccggtattagtgaaatgattggggaaaat
ggtaaaatttcggggttaagtacgcttttaaataacaaggttaagaaacgcaagatatat
aaaccgaaatcgcgggaatataaaccttggcgtccgtcagaaaatcaacatccaaattgc
gatgctccaagcggaagctctcgcaaacgcggtcgtgaagatatggcttga
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