Helianthus annuus (common sunflower): 110929540
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Entry
110929540 CDS
T05101
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
han03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110929540
09123 Folding, sorting and degradation
03018 RNA degradation
110929540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110929540
03041 Spliceosome [BR:
han03041
]
110929540
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110929540
mRNA degradation factors
5'-3' decay
Lsm complex
110929540
Spliceosome [BR:
han03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110929540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
110929540
NCBI-ProteinID:
XP_022028391
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All DBs
Position
3:63409904..63414599
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AA seq
152 aa
AA seq
DB search
MLPLSLLKTSQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEDTKNRMDRKPPGVGRGRGRGGRDDGGGGGRRQAKGGGMG
GRGGMDEGGGRGRSQGGGYPAGNRGGGRGGRG
NT seq
459 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgttatctcttctcaagacatctcaagggcatcccatgcttgtggagctgaaa
aatggtgagacttacaatgggcatttggtgaactgtgacacctggatgaatatccatctt
cgtgaagtgatttgtacctcaaaggatggtgataggttctggaggatgcctgaatgttac
attcgtggaaacactataaagtatcttcgtgtgccagatgaggtgattgacaaggttcag
gaagataccaagaaccgcatggatagaaagccacctggggtaggacgtggaaggggaaga
ggtgggcgggatgatggtggtggtggtggtaggaggcaagcaaagggtggtggcatggga
ggtcgtggcggcatggatgaaggaggtggtagaggcaggagccaaggcggaggctatccc
gctggcaacagaggtggaggccgaggtggtcgtggatga
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