Helianthus annuus (common sunflower): 110929782
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Entry
110929782 CDS
T05101
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110929782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110929782
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110929782
mRNA degradation factors
5'-3' decay
Decapping complex
110929782
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
110929782
NCBI-ProteinID:
XP_022028649
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All DBs
Position
3:complement(138065636..138071571)
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AA seq
1254 aa
AA seq
DB search
MASHTNPNQQPAGPPFDPPRFFAPSSSPPPNPNTLYPPPSSAASYPPPTVTGTVTTGGTY
SYTPQSPIYHPQFHIPSPQFHPPLQPPNPNPNPNHGVRLMALLSAPPAAESSAPVAQSSS
PMVTLNSGSGPLRMPSSKLPKGRHLSGESVVYDIDVRLPGEVQPQLEVTPITKYGSDPEL
VLGRQIAVNKSYVCYGLKYGAIRVLNINTALRSLFKGLAQRVTDMVFFADDVHLLASASM
QGRVYVWKIMETTDEDDKPQITGNIVIAIQVVGEGEPVHPRVCWHCHKQEVLVVGIGKRV
LRIDTTKVGRGEVYSAEEPLICSVDKLINGVQLVGSHDGEVTDLSMCQWMTTRLVSASVD
GTIKIWEDRKSSPIAVLRPHDGLPVNSATFLTGPHRPDHIILITGGPLNHEVKIWSSEGE
EGWLLPSDADSWHCLQTLELKSSSESRLEDAFFNQVVALSQTGLLLLANAKKNAIYVVHL
EYGPNPESTRMDYIAEFTVTMPILSFTGTSDLLPNGEQIVQVYCVQTQAIQQYALDMSQC
LPPPIDNNSYERQDSTVNVSEPSRSKTETSLEVSVPTSDGASLPRQLSSSPLTEASIEPP
PVASSPTLTRELSDLKSPAGGHDSDEMKTIEYSVDRHVDASVATDSVTDETKFKHPTHLV
TPAELMATSSSEISHVTEQKDDIDYNVLDVVSVSDPQNVELEVKVVGETGKSQTIEPVSV
SQGEIHGFASQASDFGRAVSVETYIVNESKQIDGSGGQNESQDSKTDASETLVSKTVDST
GPVLSTKGKKQKGKSGQQANLSSSAFNSTDSSIEPGISSSVPSVELILSQLHSMQEIITQ
VLANQKEIQKQIPGMVAVPVTKEGRRIEAAIGKSMEKTYKSNSDALWARTQEEFTKQEKS
NRDRSQQVLGLVTNGYKDLLAALEKMLKKETSALVPAIVRSLSPVIEKTVSTAITDAFQR
GVADKSVNQLEKSINSKLEASVARQIQTQFQTSGKQALQEALKSSIEASVIPAFEMSCKA
MFDQVDATFQKGMIEHTSTAQQQIEAAHSPLAMTLRDAINSASSVTQTLSGEIAEGQRKL
VALALAGTNPESVNPLMTQINNGPIGSFHEKIEPPVDPTKELSRLVYEHKYEEAFTSALQ
RSDVRIVSWLCSQVDLQGLLARNPLPLSQGVLLSLLQQLACDIGNDTSKKLAWMMDVVVA
IKPSDGMIAMHVRPIFDQVYSILNHQTSVPTTSVSELSSIRVVMKLINSTLRTL
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcacacaaacccaaaccagcaaccagccggaccaccattcgatcctccacgt
ttcttcgccccatcatcttccccaccaccaaaccccaacaccctttaccctccaccgtct
tccgccgcctcatacccaccacccaccgtcaccggcaccgtcaccactggcggcacatac
tcctacacccctcaatccccaatctaccacccccaattccacatcccatcaccccaattt
catccccctcttcaacccccaaaccctaaccctaaccctaatcacggagttcgattgatg
gccctattgagtgccccaccggctgcagaatcatcagcacctgtggctcaatcttctagc
cctatggttacattgaattctgggtctgggccattgaggatgcccagtagtaagcttcca
aaggggagacatttgagtggtgagagtgttgtgtatgatatagatgtgaggttgcctggt
gaggtgcagcctcagcttgaggttacgccgattaccaagtacgggtcagatcccgagctt
gttttgggtaggcagattgcggttaataagagttatgtgtgttatgggttgaaatatggg
gcgattcgggttcttaatatcaatacggctttgagatcattgtttaaaggtctagctcag
agggttacagatatggttttctttgccgatgatgttcaccttttagctagtgcaagcatg
cagggacgagtttatgtgtggaaaattatggaaaccacggatgaggatgataaaccgcaa
atcacagggaatatagttattgcaattcaggttgtaggagaaggcgaacctgttcatcct
cgtgtttgttggcactgtcataaacaagaagttcttgttgttggaattggaaaacgtgtt
ttgagaattgatactacaaaggttgggagaggtgaagtctattctgcagaggaacctctt
atatgttcggttgataaattgattaacggagttcagcttgttggtagtcatgacggtgaa
gtaacagatctatcaatgtgccaatggatgactactcgtttggtttctgcttcagtagat
ggaacgataaagatctgggaagatcgaaagtcttcaccaattgctgtattgaggccacat
gacggtctgccagtcaactctgcaacatttttaacaggcccacatcgcccagatcacatc
atacttatcactgggggtccattgaaccacgaagtgaaaatatggtcctcagagggtgaa
gaaggatggttactccctagcgatgctgattcatggcactgtttacaaacgttggagtta
aagagctcttctgaatctcgacttgaagatgcattcttcaatcaagttgttgcattatct
caaacgggccttttgttactagcaaatgcaaagaaaaatgctatttatgttgttcatttg
gaatacgggcccaacccagaatcaactcgcatggattacattgcggaatttacggttact
atgcccattctgagttttacaggcaccagtgatttattaccgaacggtgaacagattgtt
caggtttattgtgtccaaacacaggcgattcaacaatatgctttagacatgtctcaatgc
ttaccacctccaattgacaacaactcttatgagagacaagattcaaccgttaatgtttcg
gaaccttctagaagtaagacagaaacatctttggaggtctcggtacctacatctgatggt
gcttcccttccaaggcagctctcgagctctcctttgacggaagcttctattgaaccgcct
ccagtagcatcaagtcctactttgacccgtgaactttctgatttgaaaagtccagctggc
ggtcatgactctgatgagatgaaaaccattgaatattcagttgatagacacgttgacgcc
tcggtggcgactgattccgtaactgatgaaaccaagtttaagcatccgactcatttggtg
acgcctgctgaattgatggccacatcatcatctgaaataagtcacgttactgagcagaaa
gatgacattgattataatgtattggatgtggtttcagtttctgatccacagaacgttgag
ctagaggtcaaggttgttggtgaaacaggaaaaagtcaaactattgaacccgtttcggtt
tctcaaggagagattcatggttttgcttcacaggcatcagatttcggccgagctgtgtct
gtggaaacctatattgttaacgagtcgaagcaaattgacgggtcaggtggtcaaaatgaa
agtcaagattcgaaaactgatgcgtctgagactcttgtatccaaaacagttgactccacg
ggccccgtgctatcaaccaaagggaaaaaacagaaaggaaaaagtggtcaacaggcaaac
ctgtcttctagtgcttttaattcaacggattcttctattgaaccgggaatcagttcaagt
gttccctctgttgaattgatactttcacaacttcattctatgcaagaaatcattactcag
gtcttagcgaatcaaaaggagattcaaaagcagattccgggaatggtggcagtaccagtt
acaaaagaaggccggagaattgaggcagcgataggaaaaagcatggagaaaacgtacaaa
agtaattctgatgctctttgggcccgcactcaagaagaatttacaaaacaagaaaagtca
aaccgagatcgaagtcaacaagttttgggtttggttacaaatggctacaaggatttgctt
gctgctttggagaaaatgttgaagaaagaaacatctgcactcgtgccggctattgtgcgc
tcgctttctccggttattgaaaaaacagtgtctacagcaatcacagacgctttccagaga
ggggtggctgataagtctgtaaaccaattggagaaatcgataaactctaagcttgaagct
agcgttgctaggcaaattcaaacccagtttcaaacttctggcaaacaagcactacaggaa
gcacttaagtcgagtatagaagcatctgttattcctgcttttgagatgtcttgcaaggcc
atgtttgatcaagttgatgctacatttcaaaagggaatgatcgaacatacaagtacagct
cagcagcaaatcgaggccgctcattctcctttagccatgactttgagggatgccattaat
tcagcatcatccgtaactcaaaccttgagtggtgaaatagccgaaggtcaaaggaagttg
gtagctcttgcacttgcagggacaaatccagaatcagtcaacccattgatgactcaaata
aacaatggaccaattggcagtttccacgagaagatcgaaccaccagtggatccaacgaaa
gagctttctagacttgtatacgagcacaaatacgaagaagcttttacttccgcccttcaa
agaagcgatgtcaggatcgtgtcttggttatgctctcaggttgacttacaggggctatta
gcaagaaatcctttgcctcttagtcaaggagtactgttatctctgctgcagcagttggct
tgtgacattggcaatgatacatcaaagaaactcgcgtggatgatggacgtggtggtggcg
atcaagccatcggacgggatgatagcgatgcatgtacgacccatatttgatcaagtttat
tctattctaaatcatcaaacaagtgttccgaccacttcagtgtctgagctgtcgagcata
cgggtcgttatgaaactcatcaactccacactcaggaccctgtaa
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