Helianthus annuus (common sunflower): 110930521
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Entry
110930521 CDS
T05101
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03013
Nucleocytoplasmic transport
han03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110930521
03015 mRNA surveillance pathway
110930521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110930521
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110930521
5.6.2.5 RNA 5'-3' helicase
110930521
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110930521
mRNA cycle factors
Common to processing body (P body) and stress granule
110930521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
Helicase_RecD
UvrD-helicase
NPHP3_N
SRP54
ATPase
AAA_16
PhoH
AAA_22
AAA_25
Ribosomal_S13_N
Motif
Other DBs
NCBI-GeneID:
110930521
NCBI-ProteinID:
XP_022029530
LinkDB
All DBs
Position
3:165983038..165991445
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AA seq
1279 aa
AA seq
DB search
MDSQPNNLYDTASQPDTGHDDAYTFLEFNTQGDEDFDYPEFQELSQPNAVRSSPSSSVWP
TPLDSVSVDAVDHHSDTNASPVSSGKGAGGARLNNNNSNNNNNNNHNNINNSSSSNNNNQ
ASAVDALAAGMSGLNFEETGDDEGYEYSKGDFMEHACRYCGVQNPACVVRCNVPSCRKWF
CNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFILGFISAKTESV
VVLLCREPCLNLNSLKDMNWDLSQWCPLIDDRCFLQWLVKVPSETEQLRARQISAQQINK
VEELWKTNPDATLEDLEKPGVDDEPQPVAIKYEDAYQYQNVFAPLIKLEADYDKMMKESQ
SKDNLTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDPAHPAWQSVGHVIKL
TAQEEVALELRASQGVPVDLNHGFSVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHHL
LGHEVEMQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAL
VYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQV
RHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDP
RLANFRFRQVLIDESTQSTEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQS
LFERLVLLGVKPIRLQVQYRMHPSLSEFPSNNFYEGTLQNGVTINERQSTGIDFPWPVPN
RPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYI
VNYMSRNGALRQQLYKDIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVAL
TRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKMYNDR
RFFFGGGPGIVPNDNFGSTNPGADRRNSRSRGSYMPPGPPNGAHKPGLHPAGYPMPRVPI
PSYHGGPQPYAIPTRGAIHGPFGGVPHVPPPGNRGFGSGRGNAGHIPHQQGSQQPIGAGM
GSSFNFPMENPNSQPSPGGPLSQPGYVSNMTQGPSQAFRDGFSVGGMSQDFLGDDFKSQG
SHVPYNVADLSTQASQGGYGVDYAAPATQAGFPGSFLNQNSQAGFSRYGIGNDFMSQDYM
GHGSQGLFTQAGFKDPSQDDSSQPHFSADPTSSLQTQGVMNPLYSQPFTHYNSQPLNMPT
QQQQQQQQTQQGHASHYKG
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atggattcacaaccgaacaacctctacgacaccgcatcgcaaccggacaccggccacgac
gacgcctacacattcctcgaattcaacacacaaggcgacgaagactttgattatccagag
tttcaagagctttctcaacctaacgccgttagatcttctccgtcttcctccgtctggcct
acgccgttagactccgtctccgttgacgccgtcgatcatcattccgacaccaacgcctca
cctgtaagttccggcaaaggcgccggtggtgctaggttaaacaacaacaacagcaataac
aataataataataatcataataatattaataatagcagtagtagtaataataataatcag
gcatcggctgttgatgccctagctgcgggtatgagcgggttgaatttcgaagaaacaggg
gatgatgaaggttatgagtattcaaagggggattttatggagcatgcctgtaggtattgt
ggtgtgcagaatccggcttgtgttgttcggtgtaacgtgccgtcgtgtcggaaatggttt
tgtaattcgagagggaatacgtccggttcgcacattgttaatcatttggttcgggcgaag
cataaggaagtatgtctgcataaggatagtccgttgggagagacgattctcgagtgttat
aattgtggatgtcgaaatgtgtttattttggggtttatatctgcgaagacggagagtgtg
gttgtgctgctttgtagggagccttgtcttaatttgaattcgttgaaagatatgaattgg
gatttgagtcagtggtgtccgcttattgatgatagatgctttctgcagtggcttgttaag
gttccatctgaaacagagcagctgcgggctcgccagattagtgctcagcaaattaataag
gtagaagaactttggaagacgaacccggatgcaactttggaagatcttgagaagcctggt
gtggatgatgaacctcagcctgtagccataaagtatgaagatgcttatcagtatcaaaat
gttttcgccccacttatcaagcttgaagccgactatgataaaatgatgaaagaatctcaa
agtaaagacaatctcacgattcggtgggatattggtcttaacaagaagcgcgttgcatat
tttgttttcccaaaggaagacaatgagttacgtcttgtacctggtgatgagttaagactt
agatactcgggggacccagcacatccagcgtggcagtctgttggacatgtgataaagcta
actgcacaagaggaagtagcactcgagcttcgtgcaagtcagggtgttcctgttgacctg
aatcatggttttagcgttgactttgtatggaaaagcacaagttttgaccggatgcagggg
gctatgaagaactttgctgttgatgagacaagtgtcagtggatatatataccatcatctg
ttaggccatgaggttgagatgcaaatggttcgtaatgcattaccacgtcgttttggtgca
cctggtcttcccgagcttaatgcatctcaagtttttgctgtaaaaagtgttcttcagagg
ccaataagtttgattcaagggccacctggcactggtaaaacagttacttctgctgcactt
gtttaccatatggccaaacaaggccaaggacaggttttggtatgtgctccgagcaatgtg
gctgtagaccaacttgcagagaagataagtgctactggcttaaaggttgtaaggctgtgt
gcaaaatcaagggaagctgtaagttcacctgtcgagcatttgacacttcattatcaggtt
cggcatcttgatacatctgaaaagagtgagcttcacaagctgcagcaactgaaagatgaa
caaggggagttatcaagcagtgatgagaagaaatataaagcattaaaacgggctacagaa
cgggagatttctcagagtgctgatgtcatctgttgcacatgtgttggtgctggagatcct
cggctggcaaattttagatttcgtcaggtgcttatcgatgaatctactcaatcaactgag
cctgagtgccttatcccacttgttcttggggcaaaacaggttgttcttgttggtgatcat
tgtcagcttggtccagtcatcatgtgcaagaaagcagcacgagctggtttagctcagtct
ttatttgagcggcttgtgcttcttggtgtaaaaccaattagattacaggttcagtaccgt
atgcatccgtcactttcggaattcccttctaacaatttttatgaaggcacccttcaaaac
ggagtgaccataaacgaaaggcagtcaacgggcattgactttccttggcccgttccaaac
cggcccatgttcttttatgttcagatggggcaagaagaaatcagtgctagtgggacgtcg
tatcttaataggactgaggctgcaaatgttgaaaaaatagtgaccactttcctaagaagt
ggtgtagttccaagtcagattggggttataacaccatatgaaggtcaacgtgcatacatt
gttaactacatgtcaagaaatggtgcgcttagacaacaactttacaaggacattgaggtt
gcgagtgtggattcgtttcaagggagggaaaaagattacattattttgtcatgtgtgaga
agtaatgaacatcagggtattggatttttaaatgatccacgcaggctgaatgtcgcactt
actcgtgctcgttatggtattgtaattcttggtaaccctaaagttcttagcaaacaacca
ttgtggaatgggttactcacacactataaggagcatgagtgtttggttgaaggacctttg
aacaacctgaagcagagtatggttcagtttcagaagccaaaaaagatgtacaatgaccga
aggtttttctttggtggcgggcccggtatcgtacctaacgacaactttggatcaacaaat
cccggtgccgatagaagaaacagtcgttctaggggttcgtacatgccacctggcccacct
aatggggctcacaaacccggtctgcatcctgctgggtacccaatgccacgtgtgcctatt
ccatcttatcatggtggtcctcagccttacgccataccaactcgcggtgcaatacacgga
ccctttggcggtgttccgcatgtcccaccacccggaaaccgcggttttggtagtggcagg
gggaatgctggtcatattccacaccaacaaggttcacagcaaccgataggtgcaggcatg
ggctcgagttttaacttccctatggaaaatccaaatagccagccgtcccctggcggtccg
ttatctcagcctggatatgtatctaatatgactcaaggccctagtcaagcctttcgtgat
gggttttctgttggcggcatgtcacaggatttcttgggtgatgattttaaaagccaagga
tcacatgttccatataacgttgctgatctttccacacaggcttctcaaggtggatatggt
gtggactatgctgctccggcaacccaagcgggttttccgggtagcttcctgaatcagaat
tctcaagcgggattttctcgttacggtatcggaaatgatttcatgtctcaggactacatg
ggtcatggttcacagggtttgtttacgcaagctggttttaaagatccatcacaagatgat
tcttcacagccccacttcagtgcggaccccacctcttcccttcagacacagggtgtgatg
aatcctctatactcccagccatttacgcattacaactcccaaccgttaaacatgccaact
cagcaacagcagcagcaacagcaaacacaacagggacacgcttcccactacaagggttaa
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