Helianthus annuus (common sunflower): 110930528
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Entry
110930528 CDS
T05101
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110930528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110930528
03012 Translation factors [BR:
han03012
]
110930528
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110930528
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110930528
Translation factors [BR:
han03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110930528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
ATPase
AAA_19
nSTAND3
AAA_16
PhoH
AAA_30
Motif
Other DBs
NCBI-GeneID:
110930528
NCBI-ProteinID:
XP_022029535
LinkDB
All DBs
Position
8:69890017..69906180
Genome browser
AA seq
1174 aa
AA seq
DB search
MPYPAIMFMRVSLNPLRTSCRRLHLSPRFIISPLFHPSSSSSSSQQRLLVCCSSSSSSSS
HLIKRRDSSYSLPYFYQQRLPYGRYAYDEYASEDDSDLEPPPHSSQTLGASTLDNIDEWQ
WKLTTLIRKKDEQELVSRERKDRRDFDQLSALATRMGLHCRQYSKVVVFSKVPLPNYRPD
LDQKRPQREVVVSSELHSRVDYHLKAHLSRKSVARDGYPNNTMTTSPGLKTDHEQDEPHR
RSPVAEGILRRKSFQLRNIQQDWQESAEGQKMQELRRSLPAYKQKETLLNAISRNQVIVV
SGETGCGKTTQLPQYILESEIEGARGAECSIICTQPRRISAMSVAERVAAERGEKLGDSV
GYKVRLEGIKGRDTRLLFCTTGILLRRLLLDRSLQGVTHVIVDEIHERGMNEDFLLIVLK
ELLLHRPELKLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRSYFLENILEMTGYRLSA
YNQIDNYGQEKSWKMQKQTLRKRKSQIASAAEDALESADLRDLNPRTRDSLSCWNPDSIG
FNLIENVLCHICRKERAGAVLVFMTGWDDINSLKDQLLSHPLLGDPSKVLLLACHGSMDS
SEQKLIFNKPEDGIRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSW
ISKASAHQRRGRAGRVQPGECYHLYPKFVYDSFAEYQLPELLRTPLQSLCLQIKSLQLGS
ISDFLSRALQPPEPLSVQNAIEYLKIIGALDDNENLTVLGRKLSVLPVEPKLGKMLILGA
IFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSGGDNSDHFALLRAYDGWKAAE
RQQSGQEYCWRNFLSSQTLRAIDSLRKQFYYLLRESGMVDNLEKCNTWSADQHLIRAIIC
SGLFPGICSVVNKEKSISLKTMEDGPVLLYSSSVNGQESRIPYPWLVFNEKVKVNSVFLR
DSTAVSDSVLLLFGGSVTRGGLDGHLKMLGGYLEFFMKPGLAATYLALKRELNELIQLKL
LNPKMDIGQNNEFLESLKLLISGDRCEGRFVYDRKVTPVSKNSGKQSDKKSAATCGPEAE
NENSKNHLQTLLLRAGHQPPSYKTTQLKNNKFRSTVIFNGLDFVGEPCGSKRLAEKSAAS
QALEWLTGETRSSQKAIDNISTLLKKNKKKSRVH
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgccttaccctgcaataatgtttatgagagtatctctgaatccactgaggactagttgc
cggcgcctccatttgagccctagattcatcatcagccccctttttcatccctcatcatcg
tcatcgtcatcgcagcagcgactgttggtttgttgctcttcttcttcttcttcttccagt
cacctgattaagagaagggattcctcctactcgttaccctacttctaccagcagcgtttg
ccctacggccgctacgcttacgacgaatatgcttccgaagacgactctgaccttgaacct
cctccacactcctctcaaactctgggggcttcaactcttgacaacattgacgagtggcaa
tggaagctaactacactcattaggaaaaaagatgagcaagagttagtttcacgtgaaaga
aaagatagaagagattttgaccaactttctgcactcgctactcgcatgggattacactgc
cgacaatattcaaaagtagttgtttttagtaaagttccattgccaaattacagaccagat
ctcgatcaaaaacgcccacaaagagaggtggttgtttcttcagaactacacagtcgggtt
gattatcatcttaaagcgcacctttcacgaaagtctgttgccagagatggttatccaaat
aacactatgactacatcccctggtcttaaaactgatcatgagcaagacgagcctcataga
agaagtcctgttgcagagggaattctcaggcgtaagagttttcagcttcgcaatattcaa
caagattggcaggaatctgctgaaggccaaaaaatgcaagaattaaggagaagtttacct
gcatataaacaaaaggaaacattgttaaatgctatttccagaaatcaggtaattgtggtg
tctggagaaacaggttgtggtaaaacgacacagttacctcaatacatcttggagtctgaa
attgaaggtgctcgtggagctgaatgcagtattatctgtacccagcccagacgaatatct
gccatgtcagttgctgagagggttgcagcagagcgaggggagaagcttggagattctgtt
ggatataaagtccggcttgaaggaatcaaaggaagggatacccgtcttctattttgcact
actggcattttgcttagacgattacttctagacaggagcttgcaaggtgtaactcatgtt
attgttgatgagattcatgaacgagggatgaatgaagattttctacttattgttctaaag
gagctccttcttcaccgaccagaactgaagttaattttgatgagtgcaaccctaaatgct
gagcttttctcctcttactttggaggggctccaatgattcacattcctggtttcacttat
ccagttcggagctattttctggagaatattctagaaatgactggatataggttgtcagcg
tataatcaaatcgataattatggtcaagagaaaagttggaaaatgcagaagcaaacttta
cgtaaaagaaagagccaaattgcttcagctgcagaggatgcgcttgaatctgctgattta
agagatttgaatcctcggactagggattctttgtcttgttggaacccggattcgattggg
tttaatcttatcgaaaatgttctctgtcatatatgtagaaaagaaagggcaggtgctgtt
ttggtttttatgactggttgggatgatattaattcactcaaggatcaactcctgtctcat
ccgttattgggagatccatctaaagttttacttcttgcatgccatggctctatggacagc
tcagaacagaaattgatatttaataagcctgaagatggtatcaggaaaattgttctagcg
accaacatggctgagacaagcatcaccattaatgatgtagtttttgttgtcgattgcgga
aaagcaaaagaaacgtcctatgatgcactcaataacactccatgtttgcttccgtcctgg
atctcaaaggcttctgctcaccagaggagaggaagagcaggccgtgttcagccaggtgaa
tgctaccacctgtatcccaaatttgtatacgattcttttgctgaatatcaactgccagaa
ctgttgaggacacccttacagtctttatgcctccaaattaaaagtttacagcttggtagt
atttcagacttcttatcaagggccctgcagccacctgaacctttatcagttcagaacgct
attgaatacttgaaaataattggggccctagatgacaatgaaaatcttacagtgttagga
cgtaagttgtcagtacttccagttgagcccaaacttggtaaaatgctaatattaggggct
attttcaactgcctcgacccaataatgaccgttgttgctggtttaagtgtccgagatcca
tttttgatgccgtttgacaagaaggatcttgctgagtcagcaaaagcccagttttctgga
ggtgataacagtgaccattttgctcttctgcgtgcttatgatggttggaaagctgctgaa
agacaacagtcaggtcaagagtattgttggaggaacttcctttcttcacaaaccctaaga
gctattgattctcttaggaagcaattctattatttgcttagagagagtggtatggttgat
aatctggagaaatgcaacacatggagtgctgatcaacatcttatccgagccatcatatgc
tcagggctgttccctggaatttgttccgttgtgaacaaagagaaatcaatatctctgaaa
acaatggaagatggtcctgtattgctctattcaagttccgttaatgggcaagaatcaaga
atcccatatccatggctggtattcaacgaaaaagtgaaagtgaattccgtctttctacga
gattcaacagctgtgtcggattctgttcttcttttatttggaggaagtgttacaagaggc
ggtctggatggacacttgaaaatgctggggggttacttggaatttttcatgaagcctggc
ttggcagccacttatcttgccttaaagagagagctcaatgaactcattcagttgaagctt
ctgaatcccaaaatggacataggccagaacaatgaattcctggagtctctaaaactattg
atatccggggatcgctgtgagggtagatttgtgtatgaccgtaaagtaacgccggtttca
aaaaatagcgggaaacaatctgataaaaaatccgcagccacttgtggccctgaagccgag
aatgaaaattccaagaatcacttgcaaacgttacttctaagagcgggtcatcaaccgcct
tcctacaagacaacacagttaaagaacaataagtttagatccactgtgattttcaacggt
ttggattttgttggggaaccatgtggtagtaaaagacttgcagaaaaaagtgccgcatca
caggctcttgagtggttaacgggtgagacccgatcttcacaaaaggcaatcgacaatatc
tcaacattactaaagaaaaacaaaaagaagagccgagttcactaa
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