Helianthus annuus (common sunflower): 110935725
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Entry
110935725 CDS
T05101
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110935725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
han03041
]
110935725
Spliceosome [BR:
han03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110935725
Complex C
U5 SnRNP specific factors
110935725
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
110935725
NCBI-ProteinID:
XP_022033769
LinkDB
All DBs
Position
4:complement(9206713..9219361)
Genome browser
AA seq
2370 aa
AA seq
DB search
MWNNSGPEMWNNNGAIAPPGTSGGPPLAPPGTGGVGGSIPPPPAAQPSYTVLPSPAEAEA
RLEEKARKWMQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIKDHGDMSSKKYRHDKRVY
LGALKFVPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMW
IMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFY
DHKPLVKTKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKAL
NMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVRL
CVYHTPMVMYIKTEDPDLPAFYYDPLIHPITSANKDRRDKKAHDDDDEDDDFSLPDGVEP
LLTSTPLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVS
YQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNL
LIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRL
GNVDAFQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPG
CGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELR
AAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSK
ADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEA
VAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGL
IEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYL
WYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGVWDTGDGQCVVMLQTKFEKFFE
KIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGL
VLDLLLLGLTRASEIAGPPQMPNEFITFWDTKVETRHPIRLYSRYIDKVHILFRFSHEEA
RDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSIT
TLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGIWNLQNEQTKERT
AIAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELL
DLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQ
TDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTL
EDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLW
NLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSG
LNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKV
HESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLV
AESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGL
DLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSS
QNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTS
VWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIK
GSELQLPFQACLKIEKFGDLILKASEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHV
NNEKAKMLLKPDKTIVTEPHHIWPSLTDDQWVKVEVALRDLILSDYAKKNNVNTSALTQS
EIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTKTTNVHGDELIVTTTSPYEQA
AFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNVLKKFICIADLRTQIC
GYLYGMSPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNEL
PQLSPQDLTFHARILENNKQWDGEKSIILTCSFTPGSCSLTAYKLTPTGYEWGRANKDSG
SNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYY
HEDHRPTHFLEFSNLEEADVAEGDREDTFS
NT seq
7113 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaactccggaccggagatgtggaacaacaacggagcaattgctccgcctgga
accagcggaggaccgccgctggcaccgccggggactggaggtgttggtggctcgattccg
ccaccgccggctgctcaaccgtcgtacactgtgttgccttctccggctgaagcggaggcg
aggttggaggagaaggcgaggaagtggatgcagttgaattcgaagcggtatggtgataaa
cggaagtttggatttgttgagacgcagaaggaagatatgccgccggagcatgtcaggaag
attatcaaggatcatggtgatatgtcatcaaagaaataccgacatgataaacgtgtatac
ctaggggctctgaagtttgttcctcatgcagtctacaagcttctagagaacatgcccatg
ccatgggaacaggttcgtgatgttaaggtgctatatcacattactggagcaatcacgttc
gtgaacgagattccatgggttgttgaaccaatatatttagctcagtgggggaccatgtgg
attatgatgagaagggagaagagggatcgacggcatttcaagagaatgcgtttccctcct
tttgatgatgaagagcctccattggactatgctgacaatcttcttgatgtggacccgctg
gaaccaatccaactggagttggacgaggaagaagattctgctgtttatacttggttttac
gatcacaagcctcttgtcaaaaccaaacttattaacggaccaagttatcgtaaatggcat
ctttcacttcctataatggcaacactccatcgattagcaggacagcttctttctgatctt
attgatcggaattacttctatttgtttgatatggagtcgttctttactgccaaagctctt
aatatgtgcataccaggtggtccaaagtttgaacccttgtatcgtgacatggagaaaggc
gatgaagactggaacgagttcaatgatatcaacaaactcattatccgttcgcctttgagg
accgagtacagaattgctttccctcatctatacaacaacagaccgaggaaagtaaggcta
tgcgtataccacacacccatggttatgtacataaaaacagaagatcccgacttgcctgca
ttttattacgatcctttgatacacccaataacatctgctaacaaagatcgccgtgataag
aaagcccacgacgatgatgatgaagatgacgatttctctttgccagatggtgtggagcct
ctgcttactagcactcctttgtataccgacacaacagctgctggtatttctttgttgttt
gctccacgaccctttaacatgagatctggtcgtatgcgacgtgctgaagatatccctctt
gtgtccgagtggtataaggaacactgtcctccctcgtatccagttaaagttcgtgttagc
tatcagaagttactaaaatgttttgttttgaacgagctacaccatagaccaccgaaagct
caaaagaagaagcacttgttccgttctctacaggctacgaagttttttcagaccaccgaa
cttgattgggccgaagctggtcttcaagtttgtaagcagggttacaacatgctcaactta
ttgattcaccgaaaaaatcttaactaccttcatcttgactataacttcaatctaaagcct
gttaagacactcactaccaaagagcgaaagaaatcacggtttggaaatgcgttccatctt
tgtcgtgaaatcctgcgtttgacaaagcttgttgtcgatgcgaatatccagtttcgtttg
gggaatgttgatgcattccagttggctgatggtttgcagtacacgttttcacatgttggc
cagttgactggtatgtatcggtacaagtaccggctcatgcgacagattcgcatgtgcaaa
gatttgaagcatttgatttactatcggtttaatactgggcccgttgggaaggggcccgga
tgtgggttctgggcgcctatgtggcgggtgtggttgtttttccttcgtggtattgtgccc
cttctggaaaggtggttgggaaatttacttgctcgccagttcgaaggacgacactctaaa
ggggtggccaagactgttacaaagcaacgtgttgaaagtcatttcgatctcgaactccgt
gctgctgtaatgcatgatgttcttgacgccatgccagagggaataaagcaaaacaaggca
agaaccattttacagcatttgagtgaagcgtggcgttgttggaaggcaaatatcccttgg
aaggtccctggtttaccggttcctatcgagaacatgattttacgatatgtgaagtcaaaa
gctgactggtggacaaatgttgctcactataaccgtgaacgtataaggagaggtgccact
gtcgataagactgtttgtagaaagaatttggggaggttgactcgtctttggctcaaggca
gaacaggaacgccaacacaactacttgaaagacggtccatacgtgaccccagaagaggct
gtggctatttacacaaccacagtgcattggttggaatctagaaagttctcaccaatacca
ttcccaccgttgtcctacaagcatgacacaaagcttctcattcttgctctcgagaggctc
aaggaatcttacagtgtagctgtgaggttaaatcaacttcaaagagaagaattgggtttg
attgaacaagcttacgacaatccacacgaagcattgtcgaggataaaacgtcatcttctc
actcaacgtgcttttaaagaagttggcattgagttcatggatttatacagctatctgatt
ccagtttatgagatcgagccccttgagaagattacagatgcgtatcttgaccagtattta
tggtacgaaggtgacaaacgccatctgtttccaaactggattaagcctgctgactcggag
ccaccaccgctcttggtttataaatggtgccaaggcataaacaatttgcaaggtgtatgg
gacaccggtgatggccagtgtgtggtgatgcttcaaaccaagtttgaaaagttctttgag
aagatcgatctgacaatgctcaacaggcttctacgattggtccttgaccataatattgct
gattacgttacagcaaagaacaatgttgtgttgtcgtacaaggatatgagtcacacgaac
tcatacgggctgatacgtggtcttcagtttgcttctttcgtggtacaatactatgggctg
gtgttggatcttttgcttcttggattgacccgtgcaagtgaaattgcgggcccgccacaa
atgcctaacgagttcattactttctgggacactaaagttgaaacacgacatcctatacgg
ttgtactctcggtacatcgataaagtgcatatcttgtttcggttctcacatgaagaggct
cgtgatctgatccagaggtatctcactgagcatcctgatcctaacaacgaaaatatggtt
ggttacaataataagaagtgctggcctagagatgcaagaatgaggctgatgaaacatgac
gttaatcttggaagaagtgttttctgggacatgaagaaccggcttcctagaagcatcacg
actctagagtgggaaaatagctttgtttcggtttacagcaaagacaacccgaatctgcta
tttagcatgtgtggatttgaggttcgaatattgccaaaaataagaatgactcaagaggca
ttcagtaacacaaaagatggaatatggaatttgcagaatgaacagacgaaagagcgtaca
gcaattgcgtttttgagagtagatgatgaacacatgaaagtgttcgaaaaccgtgtaagg
caaattcttatgagttcaggttctacaacgtttaccaaaattgttaacaagtggaacaca
gctctaataggtctaatgacgtacttccgtgaagcaactgtgcatacacaggagctttta
gatctgttggtcaaatgtgaaaacaaaatacaaacccgtatcaaaattggattgaattca
aaaatgcctagcaggtttccgcctgtgattttttacacacccaaggagatcggagggctt
ggtatgttatcaatgggtcacatattgattccacagagtgatcttcggtacagtcagcag
acagatgttggtgtaacacactttagaagtggtatgagtcatgaagaagaccagttgatt
ccaaatctgtatcgttacattcagccatgggagagtgagttcatcgattcacagcgcgtt
tgggctgaatacgctctcaagaggcaggaagctcagtcgcaaaacaggcgtttaacactt
gaagatttggaagactcatgggatcgtggaataccgagaatcaatactctgttccagaag
gatcgacacacacttgcatacgacaaagggtggagagtgagaactgattttaagcagtac
caagttctcaaacaaaatccattttggtggacccaccagagacacgatggtaaactttgg
aacttgaataactatcgaactgatgttattcaagcactcggtggtgttgagggtattttg
gagcatacactcttcaagggaacatatttcccaacatgggagggtctgttttgggagaaa
gcttcaggttttgaagagtcaatgaagtacaagaagctgactaacgctcagagatccggg
cttaatcaaatccccaaccgtcggttcacactttggtggtctccaaccattaaccgagcg
aacgtttacgtcggtttccaagtccaactggacttgaccggaatattcatgcatggaaaa
atcccgaccctaaagatctccctgattcaaatcttccgggcccatttgtggcaaaaggta
catgagagtgtggtgatggatctctgtcaagtgttggatcaggaactcgatgcgttagaa
atcgaaacggtgcagaaggaaacaatacatcctagaaagagttacaagatgaacagttcg
tgtgctgatattctcttgtttgctgcacatagatggcccatgtcgaagcctagccttgtg
gccgagtcaaaggatgtctttgaccagaaagctagtaataagtactggattgatgtccag
ttgcgttggggtgattatgattctcatgatatcgagcgttataccagagccaagtttatg
gactacaccactgataacatgtccatctatccatcaccaacaggggtgatgatcggactt
gatcttgcttacaacttgcattctgctttcggtaactggttcccagggtcaaagccgcta
cttgcccaggccatgaacaagattatgaagtcaaatccggctttatatgtgctgagggag
cgaataaggaaagggttgcagttgtattcttcagagccaacagaaccgtatctttcatct
caaaactatggagaaattttcagcaatcagattatctggtttgttgatgatacgaacgtc
taccgtgtcaccattcataaaacttttgagggaaatcttaccacaaagccgattaacggt
gctatattcatattcaatcctcgcacaggacagctatttctgaaggtcattcacacaagt
gtgtgggcgggtcaaaagcgtcttggtcaacttgccaagtggaaaacagcagaagaagtg
gctgctctggttcgttccttacccgttgaagaacaacccaaacaaatcattgtgacacgt
aaaggaatgcttgacccgctagaagtccacttactcgattttcccaacattgtcatcaag
ggaagtgagttacaactccccttccaagcctgtttgaaaatcgagaagtttggtgacttg
attctgaaagcgtctgaaccgcaaatggtgctgttcaacatttacgacgattggctgaaa
agcatatcgtcgtacaccgcgttctccaggctcattttgattctccgtgctttacatgtc
aacaacgagaaagcgaaaatgttgctcaagcccgataagacaatcgtcaccgaaccccat
catatttggccctcacttaccgatgatcaatgggtgaaggtggaagttgcattaagagat
ctcatattgtcggactatgcgaagaagaataacgttaacacttctgcactcacgcaatct
gaaatacgagatattattcttggtgccgaaattactccaccttcacagcagcggcaacaa
atcgctgaaatcgaaaaacaggcgaaagaagctagccagttgacagctgtcacaaccaaa
acaacaaacgttcatggagacgagcttattgtcaccaccacaagtccttacgaacaagcc
gcatttggttccaagactgattggcgtgtgcgagcaatatcagctacaaatctctatctc
cgtgtgaatcatatttatgtcaactcagaggacataaaggagacgggatacacatacatc
atgccgaagaacgtcttgaagaaattcatatgcattgcagacttgcgaacccaaatttgc
gggtacttgtacggtatgagtccacccgacaatcctcaagtgaaagaaatccgctgcatt
gccatgccaccgcaatggggtacacatcagcaagtccatctcccgtcggctctccccgaa
cacgacttccttaacgatctcgaaccgttgggatggatgcacacgcaaccaaacgagctt
cctcaactatctccacaggatcttacgtttcatgctcggattttggagaataacaagcaa
tgggacggggagaaatctatcattttaacttgtagtttcactccgggttcgtgctcgttg
accgcgtacaagcttacaccaactggttacgagtggggtcgtgcgaataaggattctgga
agcaacccccacgggtatcttccaactcattacgagaaggttcagatgcttctaagtgac
cgattcctcggtttctacatggttcctgataacggtccatggaactacaatttcatggga
gtgaagcatacggttagtatgaaatacggagtgaagctcgggactccacgggagtattat
catgaagaccacagaccgacgcatttcttggaatttagcaatctggaagaggctgacgtg
gcagaaggtgatcgcgaggatacattttcttaa
DBGET
integrated database retrieval system
