Helianthus annuus (common sunflower): 110937273
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Entry
110937273 CDS
T05101
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
han
Helianthus annuus (common sunflower)
Brite
KEGG Orthology (KO) [BR:
han00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
han03041
]
110937273
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110937273
Spliceosome [BR:
han03041
]
Complex C
Other components
Complex C specific factors
110937273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_19
AAA_30
AAA_7
ResIII
AAA_29
nSTAND3
AAA_23
T2SSE
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110937273
NCBI-ProteinID:
XP_022035359
LinkDB
All DBs
Position
4:complement(167346374..167353127)
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AA seq
695 aa
AA seq
DB search
MTQFWKPGTAKPRLLDDEEGGVLFYSATPSSSHSYGYASLENQRQRLPVFKYRTSILYLV
ETHSTTIIVGETGSGKTTQIPQYLKEAGWADGGHIIACTQPRRLAVQSVAARVAEEMGVK
LGEEVGYTIRFEDVTNSDLTKIKFLTDGVLLREMMDDPLLSKYSVIMVDEAHERSLSTDI
LLGLLKKIQRRRPELRLIIASATIEAKSMAAFFQIRKRRPRLEGEDSGLQTEPAILSVEG
RGYNVQIFYVEEPVSDYLRATVSTVMSIHDKEPMGDILVFLTGQDDIDTAVQLITEEAQN
SGKSSLGLIVLPLYSGLTRADQDLVFSPSPRGKRKVVISTNIAETSLTLEGIVYVVDSGF
SKQRFYNPITDIENLVVAPISKASARQRAGRAGRIRPGKCYRLYTEDYFANEMSSHGIPE
MQRSNLVSSVIQLKALGIDNILGFDWPASPSSESMVRALEVLYSLGVLDDDAKLTSPVGF
QVAELPLDPMISKMIIASDQLGCSEEIITVSAVLSVQSIWISVKGQRELDEAKLRFAAAE
GDHVTFLNVYKGFLQSNKSSKWCHKNFINYHAMKKVLEVREQLRRIAQRIGLDLKSCEND
TQVLRKAVTAGFFANACRLEPYSHNGMYKTVRSSQEVYIHPSSVLFRVNPKWVIYNSLVS
TDRQYMRNVISIEPSWLREAAPHFYQQQPMNANRH
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaattctggaaaccaggaaccgcgaagcctcggcttctggacgacgaagaaggc
ggcgttctattctattccgccactccatcctcttcacactcatatggctatgcgagctta
gagaaccagaggcagaggttacctgtgttcaagtacagaacgtctattttgtatctggtg
gagactcattccaccactattattgttggagaaactggcagtggtaaaaccactcaaatc
cctcagtatcttaaggaagcggggtgggctgatggtggacatattattgcttgtactcag
ccaagacgtttagccgtgcagagtgttgctgcaagggtggcagaagaaatgggagtcaaa
cttggggaggaagttggttatactattcgatttgaagatgtgacaaattcagacttaaca
aagatcaaatttctcactgatggagtattactaagagaaatgatggatgatcctctcctt
agcaagtacagtgtgattatggtagatgaagctcatgagagatccctttcaacagacata
ttgttgggtctactgaaaaagattcaacgccgtaggcccgagttgcgccttattattgct
tcagccacaatcgaagccaaatcaatggctgcatttttccaaatcagaaaaaggaggcct
cgattggaaggagaagatagtggactgcagacggaacctgctattttgtctgttgagggt
agaggatataacgttcagattttctatgttgaagagcctgtttcagattatcttcgagct
actgtttcaacagtaatgtcaattcatgataaggagccaatgggggatattcttgtcttt
ttaactggccaagatgatattgatactgccgttcaattaatcacggaagaagcccaaaat
agcggcaagtcttctctaggattgattgttttgcctttgtattctggactcactcgtgca
gatcaggacttggtgttttctccttcccccagagggaaacgaaaggtggtgatctcaacc
aatattgcagagacatccctgacgttagagggtatcgtctatgttgttgatagtggtttc
tcaaaacaaaggttttacaacccgattacagatatagaaaaccttgtagtggcaccgata
tccaaagcatctgctagacaacgggccggaagggctggaagaatacgacccgggaaatgt
tacaggctatatacagaggattattttgccaatgagatgtcgtcacatgggattcctgag
atgcaaagatcgaaccttgtatctagtgtgattcagttaaaggcattgggtattgataat
atcttagggtttgattggcccgcatcaccatcatccgaatcaatggtcagagctcttgaa
gtattgtattcacttggagttctcgatgatgatgcaaaacttacttcgccagtaggattt
caagttgcagagctaccattggatcccatgatctcaaaaatgatcatagcatcagatcaa
cttggatgttctgaagaaataataaccgtctctgctgtcctctcagttcagtcaatatgg
atatccgttaaggggcagagggaactggatgaggccaagttgagatttgccgcagccgag
ggtgatcatgtgaccttcctgaatgtatacaagggatttcttcagtcaaataaatcttca
aaatggtgtcacaaaaactttattaattaccatgcgatgaaaaaggtactcgaagtcaga
gaacagctaagaagaatagcacaacgaataggattagacttaaaatcatgcgaaaacgat
acgcaggtgctaagaaaggcggtaactgctggattttttgctaatgcatgtcgtttagag
ccatacagtcataacgggatgtacaagactgtcaggagttctcaagaagtttacattcat
ccatcgtctgtactgttcagggtgaacccaaaatgggttatatataattcacttgtatcg
acagatcgtcaatacatgcgcaacgttatttccattgagccttcttggttgagagaggct
gcacctcacttttaccaacagcaaccaatgaatgctaatcgccattaa
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