Helianthus annuus (common sunflower): 110938018
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Entry
110938018 CDS
T05101
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
han
Helianthus annuus (common sunflower)
Brite
KEGG Orthology (KO) [BR:
han00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
han03021
]
110938018
03036 Chromosome and associated proteins [BR:
han03036
]
110938018
Transcription machinery [BR:
han03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
110938018
Chromosome and associated proteins [BR:
han03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
110938018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
HTH_44
Spt6_S1
HHH_9
Tex_central_region
SH2
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
110938018
NCBI-ProteinID:
XP_022036181
LinkDB
All DBs
Position
4:202419201..202429349
Genome browser
AA seq
1543 aa
AA seq
DB search
MAGKTILSDEEEDDIGVEEVGLEDRRDDDEEEEEEEGEDEYEKDGFIVDDIDEDGEEEDR
ADSDDERQKKKKRKKRESERNFVLDEDDYELLQDNNVGYRRPKESQKFKRLKKARADADE
GQSGFSDEEEYDVTGKGGRSAEDKIKRSLFDDDEGPPLEDIAEEDPQLEEEEYGDIGEEE
EDEMADFIVDEDEVDEHGEPTRRRKVHKKKLRQAPGVSSTAIQESHDIFGHVDVLLMQRK
LKLGNISRYEEAGERRLEDEFDPIILSEKYMTEYDKRIREIDIPERMQISEESTGPPPTD
EVSIEDESNWILNQLGTGTVPLFTKGHELAVRKDDIGRFLEYTHVQKLDVPFIAMYRKDE
CQSLFVDPEPQDDSKPTLTWHKVLWAILELDRKWLLLQKRKSALQLYYNKRFEEERSVYD
EARLHLNKKLFDSITKSLEVAESEREVDDVDLKFNLHFPPGDAVVDETKFKRPKRKSQYS
VCCKSGLWEVASVFGYSSEEFGLLISLEQMRTDELEDAKETPEEVASRFSCAMFENPQAV
LRGARHMAAIEISCEPCVRRHVRSIFMDNAVVSTKPTADGDMAIDSHHQFAVIKWLKDKP
MSKFDDAQWLLIQKAEEEKLIQVSVKLPVSIQDQLINDAYTYYLSDGVSKSAQLWNEQRK
QIINDAFDGLLLPSMAKEARTLLTSRAKNWLLTEYGRHLWDKVSVAPYQKKDHDGNLSDD
YEVAPRVMACCWGPGKPATTFVMLDSNGEFVDVLYAGSISIGGQNANDQERKKNDKQRVA
KFMIEHQPHVVVLGAVNLSCAWLKDEICNVICKIFEDNPRDIKREMVGVTIVCADETIPH
LYESSRISSEQLQPHPGIVKRAMALGRYLQNPLAMVATLCGPAKEVLSWKLTPLESFLTP
DEKYTMVEQIMVDATNQVGLDVNLAVTHEWLFAPLQFISGLGPRKAVSLQKSLVRAGSMH
TRKDFLDHKVLDHELDRKVFVNAVGFLRVRQSGNAASSGQFVDLLDDTRIHPESYGLAQE
LARDMYMEDGQDANDEEMLEMAIEHMRENPHLLKRLEVDAYARSRNFENKKDTLNHIRLE
LIQGFQDWRKPYVELTPDEEFYMFTGETEETLSVGKIVQATVRRVQPEKAVCVLDSGLTG
LLGIEDFSRGENDLTEKLNEGDILTCKIKSIQIKRRHVLLSCKESDLTYGRSNFENGKEN
VDPYYCEDPNNLGNEKEKTRKAKESAKKHFKSRMIVHPRFQNITADEAMQMLADKEPGDV
IIRPSSRGPSILTLTLKIYDGVYAHKDITEGGKENKDVTSMLRLGKTLKIGDDVFDDLDE
VMDRYVDPFVAHLKAMLAYRKFRDGGKAEVDESLRREKNENPSRIVYSFGVCHEHPGAII
LTYIRSSNPHHEYVGLYPKGFKFRTRMFEEIDRLVAYFQRHIDDPLDAGPSMPLVAAMVP
MPMRSPAGGGSGGWEGQSGDRERADVIAGRSDYRNVGGHDGHPSGLPRPYGDGLGWGRGQ
GPYNRGNDGGFGRSKDGEELWGGSGMKRSPVVGGGGAGWGSGW
NT seq
4632 nt
NT seq
+upstream
nt +downstream
nt
atggccggaaaaaccatattatcagacgaagaagaagatgacattggagttgaagaagtt
ggtcttgaagatcgtcgtgatgatgatgaagaggaagaagaagaagaaggcgaggatgag
tatgagaaagatgggttcatagtcgatgatattgatgaagatggggaggaagaagatagg
gcagatagtgatgacgagagacaaaagaagaaaaaacgaaagaaacgagaatcggagagg
aattttgttcttgatgaagacgactacgagcttcttcaagataataacgtcggttatcga
cgtccaaaggagagtcaaaagtttaagcgattaaagaaagcaagggccgacgctgatgaa
gggcaatctggattttccgatgaggaagagtatgacgtaactggaaagggtgggcgaagt
gcagaagataaaattaaacgtagtttatttgacgatgacgagggtccgccgttagaggat
attgccgaagaggatccacaattagaagaagaagaatatggtgacatcggtgaagaagaa
gaagacgaaatggctgacttcattgttgacgaagatgaggttgatgaacacggagaacca
acaaggagaaggaaggttcacaagaaaaaacttaggcaggccccgggagtctcgtctacc
gcaattcaagaatctcacgacatatttggtcatgtagatgtgctcttgatgcaaaggaaa
ttaaagctaggaaacatcagtaggtacgaagaagccggtgaaaggagactagaagacgaa
tttgatccgattattctctctgaaaaatacatgaccgagtatgataagcgcattcgggag
atagatattccagaaagaatgcagatctccgaggaaagcactggtccaccaccaacagac
gaagttagtatagaagacgagagtaactggattcttaatcaacttggaacgggtacggta
cctttgttcaccaaaggacatgagctggcagtacgtaaggacgatattggtaggtttttg
gaatatacgcatgttcagaagttggatgtgccgtttattgctatgtatagaaaggatgag
tgccaaagcctttttgtagatccagagccacaagatgactcgaaacccacgctgacgtgg
cacaaggtactttgggctattttggagttagacaggaagtggttactgcttcaaaaacga
aaaagcgcgctacagttatactacaacaagcggtttgaagaagaaagaagcgtatatgac
gaagcacgtcttcatttgaataaaaaactgtttgattcaattacaaagtctctcgaagtt
gctgagtcagaacgagaagttgatgacgtggacttaaaatttaacctgcatttccctcct
ggtgatgctgtcgttgatgaaacaaagttcaaaagacccaaacggaaatcgcagtacagc
gtttgttgcaaatccggactgtgggaggttgctagcgtgtttggttacagctctgaggaa
ttcggattgcttatctctcttgaacaaatgagaaccgatgaattagaggatgcaaaggaa
acgccagaagaagtggcttcgagattttcatgtgcaatgtttgaaaatcctcaagctgtt
cttagaggagctaggcatatggcggcaattgagattagctgcgagccatgtgtgaggaga
catgttagaagcatattcatggataacgctgtggtgtcaactaaacccaccgctgacggt
gacatggctatagactcacatcatcaatttgcggtgatcaaatggttgaaagacaaaccg
atgtctaaatttgatgatgcacagtggcttcttatccaaaaggctgaagaagagaaactt
attcaagtttccgtaaagcttcccgtatctatccaagatcaactgattaatgacgcgtat
acttattatcttagtgacggcgttagtaaatctgctcaattatggaatgaacaaaggaag
cagataataaacgacgcgtttgatggtttgcttttaccgtcaatggcaaaagaagcgaga
actttgttaacaagcagagcgaaaaactggttactaacggaatatggaagacatttatgg
gataaagtatctgttgcaccctatcagaaaaaagatcacgatggtaatctatctgatgat
tatgaagttgcaccgagagttatggcatgctgttggggcccggggaagcccgcaactacg
tttgtgatgttggactcgaatggtgaatttgttgatgtattgtatgccggttccattagc
attggtgggcaaaacgctaatgatcaagaacgtaagaagaatgataaacagcgtgtcgct
aagttcatgatagagcatcaaccgcatgttgtggttcttggagctgttaatttgtcttgt
gcttggctcaaggacgagatttgcaatgttatatgtaagatatttgaagacaacccgaga
gacattaagcgtgagatggttggtgtaactatcgtatgtgctgacgagactatcccacac
ttgtatgaaagctcccgcatttcatccgaacagcttcaaccacaccccggcatcgttaaa
cgagcgatggccctcgggcgttaccttcaaaatccattagcaatggtagctaccctctgc
gggcccgcaaaggaggtattatcctggaaacttactccgttagaaagctttttaactccc
gatgaaaaatacaccatggttgaacaaataatggtcgacgccactaaccaagtaggtcta
gatgtaaatttagccgtaacccatgaatggttatttgctccgttacaatttatttccggg
ctcgggcccagaaaagccgtttctctacaaaagtcgttggtgcgggctggctcgatgcac
acccgtaaagactttttggaccacaaggtattggaccacgagctagacagaaaggttttt
gtaaatgccgtcgggttcttacgggttcgtcaaagtggaaatgcggctagcagtggtcaa
ttcgttgacttgttagatgatacgcgaatccacccggaatcatacgggctcgcacaggaa
ttggcgagagatatgtacatggaagacggtcaagatgcaaacgatgaagagatgcttgaa
atggcgatagaacacatgagagaaaaccctcatttgttaaaacgtctggaagtcgatgct
tatgcgagatctagaaattttgaaaataaaaaggacactttgaatcacatacgattggag
ttgattcaagggtttcaagattggcgaaaaccgtatgtggaactgactccagatgaagag
ttctacatgtttactggtgagacagaggagacactttccgtgggtaaaattgtccaagcg
actgttcgtagggttcaacctgaaaaagcggtatgtgttcttgactcggggttgaccggt
ttgctcggtatagaagacttcagtcgaggagagaatgatttgacggagaagttgaatgaa
ggcgatatattaacttgcaaaataaaatcaattcagataaaacggcgtcatgtgctttta
agctgtaaagaaagcgatttaacgtacggccgcagtaatttcgaaaatggaaaggaaaac
gtagatccttattattgcgaagaccccaataatttaggcaatgaaaaggaaaaaacgcgt
aaagctaaagagtcggcaaagaagcatttcaaatcgagaatgatcgttcatcctcgtttt
cagaacattacggctgatgaagcaatgcagatgttggcagataaggaacctggtgatgtt
atcattcgtcctagcagccgtggaccgtcgattttgactttgactctaaagatctacgat
ggcgtttatgctcacaaggacatcaccgaaggtgggaaagagaataaagacgttactagc
atgttacgccttggaaaaactttgaaaataggagatgatgtatttgacgatctggacgag
gtgatggatcgttatgtggatccttttgtagctcacttaaaggcgatgttggcttaccga
aagtttagagatggggggaaagctgaagtcgatgaaagtttaagaagagagaaaaatgaa
aacccgtcaaggattgtttactcgtttggtgtatgtcatgaacacccgggggcgattatt
ttaacgtatataaggagttcaaatccgcatcacgagtatgttggattatatccgaaagga
ttcaaattccgcacgaggatgtttgaggaaattgatagacttgtggcgtattttcaaaga
cacattgatgatccactagatgcgggaccgtctatgccattagttgccgccatggtgcca
atgccaatgcgcagccctgcaggcggtggttctggtggctgggaaggccagtctggagat
cgagaaagagctgatgttattgcaggtagaagtgattacaggaatgttggtggtcatgat
ggacatccaagtggtctgccacggccttatggtgatggtcttgggtggggccgaggacaa
gggccgtacaacagaggaaacgacggtggatttggaaggtctaaggacggggaagagtta
tggggtggcagcggcatgaagagaagtccggtggttggcggaggcggtgctgggtggggc
agtgggtggtag
DBGET
integrated database retrieval system
