Helianthus annuus (common sunflower): 110938105
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Entry
110938105 CDS
T05101
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110938105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110938105
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
110938105
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
110938105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
110938105
NCBI-ProteinID:
XP_022036269
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All DBs
Position
4:204258335..204262588
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AA seq
287 aa
AA seq
DB search
MVGLSVGEKHFIQGGIAQDLRTDGRKRLTYRPIFVETGVIAQANGSARVKMGKTEVIASV
KAELGRPSSSAPDKGKVSIFVDCSPTAAPQFEGRGGEELSMELSAALRQCLLGGKSGAGA
GINLSSLSIVDGKVCWDLYIDGLVVSMDGNVLDALGAAIKAALSNTGIPKVNIASAATPD
EQPEVDVSDEEFLQFDTTAVLVIVTLTKVGRHYIVDATSEEESQMSSAVSVSVNRQGLIC
GLTKRGGAGLDPSVIYDMISVAKHVSEQLMNKLDSEIAAAEAMEEDS
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggtgggattatccgttggagaaaagcattttatacaaggcggaattgctcaagacctc
cgcactgatggccgcaaaagattaacatatcgtccgatattcgtggaaaccggagtcatt
gctcaagcgaatggttctgcaagagttaagatgggtaaaactgaagtcatagctagtgtc
aaggctgagttaggaagaccaagttcttcagctcctgataaagggaaagtttctatcttt
gttgattgtagtcccactgcagcaccacagtttgaggggagaggtggtgaagaactgtca
atggaactatctgcagcccttagacagtgtctattgggaggtaaaagtggggcaggtgct
ggaattaatctttcgtctttgtcaattgtggacggcaaagtttgttgggatctatatatt
gatggtcttgtggttagtatggatggaaatgtgcttgatgctttaggtgctgccattaag
gctgctttaagcaacacaggtattccaaaagtcaacattgcgtcagccgccacaccagat
gaacaaccagaggttgacgtgagcgatgaagagtttctacaatttgacacgacagcagtc
ctggttatagttactttaactaaggttggaaggcattatattgtagatgcaacttcagaa
gaggaatcacaaatgagctctgccgtttcggtgtcagtcaaccggcaaggattgatatgt
gggttgaccaaaagagggggtgcgggtttagacccgagtgtgatttatgatatgatatcg
gtggctaaacatgtaagtgagcagttgatgaacaaattggattccgagattgctgcagct
gaggctatggaagaagattcatga
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