Helianthus annuus (common sunflower): 110943476
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Entry
110943476 CDS
T05101
Name
(RefSeq) nuclear exosome regulator NRDE2
KO
K26109
nuclear exosome regulator NRDE2
Organism
han
Helianthus annuus (common sunflower)
Brite
KEGG Orthology (KO) [BR:
han00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110943476
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110943476
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_Syf1_CNRKL1_N
Suf
HAT_PRP39_N
TPR_19
TPR_11
Motif
Other DBs
NCBI-GeneID:
110943476
NCBI-ProteinID:
XP_022040918
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All DBs
Position
14:31431152..31445968
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AA seq
1153 aa
AA seq
DB search
MADESPAVEEQEPLRPPSTTLFPVSKQTPSAPINPLQVSNSTTPTPTPTWLTNTSFTADI
STINDVVSSLHHHHTEPEQTAEEQQTDERRRYDLVDSSASDQDEDVDVDGRSSRKKEKRK
RRKRKQRDYEYGSLSRKHKIQSWATDATGSNKEYYFDSRGDLDNLAFGSLYRMDIARYKL
FHGTKSSSFNYNAFGPSNTKYSDFDRDNDANSLDTKLKSEGRYWSAKYAALEHHRNFKRF
RIVAPKDSSQQTATDFIPLSDETASIDGQPTNSSIVEESWEDEVLRKTKHFNKMTREQPY
NDKIWLEFAEFQDKVESRQPQRGARLQTLEKKISILEKAVELNPDNEELLLALMNAYQRR
DNNDVLIGRWEKLLTRHSGSYKLWREFLRFVQGDFSRFKVSEVRKMFANAIQALSAACSK
HHRQAQQNDKSSADPLLVQQELGLVNTFVSLCRFEWNSGYQELATALFQAEIEYSLFCPS
LLLSEHGKQRLFEYFWNSTGARIGEDGAHGWLNWLEKEEEQRQKAMIESESSANVDEGGW
TGWQEPKTEGDVAVADVGMVDGGEDDDVGMEEKDDTEALMKLLGIKGEIEANGEVQDVST
WVKWSEEELSRDFNQWMPVRAESGSSVKDELVDKEGDDQLLRSVLFEDVSEYLFSITTEE
VRLSLVYQFIDFFGGRISQWSSTNSSSWAERILMMESPPDSMLDDLRKAEGILRKSESCE
SGYSLEHVLNGFDNIHMRSEIMKFVRNVTLQCLNVFSHDHVLKEGALVAEELSKTRMNSC
CVAVTPCRPLAKSLLKSNRQDVHLCGVYAKREAAFGNIEYARKAFDMALLSIEGLPWDAK
SKAALLFFWYAEVELNGNSSESLPRALHILCCLGCGIKYTPFKSQPSSLQLLRARQGFKE
QVRMIQATWIRGTIDDNSVASVCSAALFEELTTGWEAAIDVLNQALSTVLPERRSQSHQL
ELLFNFHMNLLWKHHSQSELANVWKFVLQGLQIYPFSPKLYNAVVQIGHLHTSPNKLRWI
IDDFLHKKPSVTLCLFALSYEISKGSSCHRIHRIFEKALADNVLRDSVLLWRLYIDYDIH
VACDLSAARRVYFRAIHTCPWSKKLWLDGFTKLNSVLTTKELSDLLEVMRDKEINVRTDV
YEILLQDEMDLSS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaatcaccagcagtagaagaacaagaacctctccgcccaccatccacaaca
ctcttccctgtatccaaacaaaccccatctgccccaattaaccctctacaagtctccaat
tccaccacccccacccccacccccacttggctcactaacaccagcttcaccgccgacata
tcaaccatcaacgacgtcgtatcctcccttcaccaccaccacaccgaacccgaacaaact
gcagaagaacaacaaacagatgaacgacgtcgttacgatttggttgactcgtccgcatcg
gatcaggatgaggatgttgatgttgatggcagaagcagtaggaaaaaggagaaacggaaa
cggaggaagaggaagcagagggattatgaatatgggtctttgtctaggaagcacaagatt
cagtcatgggcgactgatgctactgggagtaataaagagtattactttgattcgcgtggg
gatcttgataatttggcttttggttctctttacagaatggacattgctagatataaacta
tttcatggaaccaagtcttcttcgtttaactacaatgcattcggtccgtcgaacacaaag
tattccgacttcgatagagataacgatgcgaattcattagacactaaactcaaatccgaa
ggacgttactggtccgctaagtacgctgcattagagcaccataggaactttaaacgcttt
cgaatcgtcgctcctaaagactcatcccaacaaaccgctactgatttcataccactttca
gatgagacagcttcaatcgacggtcaaccgacaaattcctcaatagtcgaagaatcatgg
gaagatgaggtgttacggaaaacaaaacatttcaacaaaatgacgagagagcaaccgtat
aacgacaaaatttggttagaatttgcggaatttcaagataaagttgaaagcagacagccg
caacggggtgcgcgtttacagacgttggagaagaagattagcatattggagaaggcggtc
gagcttaatcctgataacgaggaactacttcttgcgcttatgaacgcgtatcaaagacga
gataataatgatgtgttgattggtagatgggagaagttgttgacgcgccattcggggagt
tacaagctttggagggagtttttgagatttgttcaaggggatttttcgagatttaaggtt
tcagaagtgcggaaaatgtttgcgaatgcgatacaggctctgtcggctgcatgcagcaag
catcataggcaggctcaacagaacgataaatcatcagcggacccacttcttgttcaacaa
gaacttggactggtcaatacattcgtgagtttatgccggttcgagtggaattcgggctat
caagaattagctacagctttatttcaggcggaaatagaatacagtttattctgtccatct
ttacttctatccgagcatggtaaacaaagactgtttgagtacttctggaatagtaccggt
gcacgaatcggagaagacggggcccacgggtggttaaattggctcgaaaaagaggaagaa
cagagacaaaaggcgatgatagagtctgagtcatctgctaatgttgatgaaggcggctgg
acgggttggcaagaacctaaaaccgaaggtgacgtggcagttgctgatgttgggatggtt
gacggtggtgaagatgatgatgtgggtatggaagaaaaagatgatacggaggctttaatg
aagttgcttgggatcaagggtgaaattgaagctaatggtgaggtgcaagatgtatcgacg
tgggttaaatggtcagaggaagagttgtcgagagactttaatcaatggatgcctgttcgc
gcggaatctgggagttcagttaaggatgagctcgtagacaaggaaggtgatgaccaactt
ctgagatcggtattatttgaggatgtgagtgagtacttgttttcaataactacagaggaa
gttcgtttgtcactcgtgtaccagttcattgatttctttggagggagaatttcacagtgg
tcttcaactaatagctcgagttgggccgagagaatcctaatgatggagtcaccgccagat
tcaatgttggatgacttgaggaaagccgaggggattttgagaaaatctgaaagctgtgag
agcggttacagtttagaacatgttttgaatggcttcgataacatacatatgagaagtgag
attatgaaatttgttcggaatgttactttacaatgtttaaatgtattttcgcatgaccac
gttttaaaagaaggtgcacttgttgccgaagagctttcgaaaacaaggatgaattcatgt
tgtgttgcagtcactccatgtcgcccattggcaaagagtctgttaaaaagcaaccgccag
gatgtacatctatgcggtgtttacgcgaaaagggaggctgcattcggaaatatagaatac
gcacgaaaggcgtttgacatggcattgttatcaattgaaggcctcccatgggatgctaaa
tcaaaggccgcccttttgtttttttggtacgcggaggtggagcttaacggtaactcgtca
gaatcattaccacgtgcattgcacattctttgttgtttgggatgcgggataaaatatact
ccgtttaaaagtcaaccatcaagtctgcagttgttgagggcccgccaaggatttaaggaa
caagtaaggatgattcaggcaacgtggatacgtgggaccatagatgacaattctgttgct
tctgtttgttctgctgctttatttgaagagttgactaccggatgggaagctgctatagat
gttctaaatcaagctctttctactgttcttccagaaagaagaagccaaagtcatcaactt
gaattattattcaatttccacatgaacctactttggaaacatcactcgcaatcagaatta
gcaaacgtttggaagttcgttttacaagggttgcagatatatccattcagccctaaactc
tacaatgcagttgttcaaatcggacatcttcatacttcacctaataaactaaggtggatc
attgatgacttcttacataagaaaccatcagtgacgctttgtctctttgctttatcatat
gagattagtaagggaagttcatgtcatagaatacatagaatctttgaaaaggcgttggct
gacaacgtgttgcgggattctgtactgttgtggcgactgtacatcgattatgatattcat
gtggcgtgtgacttgtctgcggctagacgagtttacttccgtgccatccacacatgtcca
tggtcaaaaaaactatggctggatgggttcaccaaactaaactctgtgttaaccacaaaa
gagctttcggatctgttggaagttatgcgagacaaagaaatcaatgtgaggactgatgtg
tatgagatccttttgcaagacgagatggatttatcctcgtaa
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integrated database retrieval system