Halobacterium salinarum NRC-34001: LJ422_00620
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Entry
LJ422_00620 CDS
T07949
Name
(GenBank) single-stranded DNA binding protein
KO
K07466
replication factor A1
Organism
hanr
Halobacterium salinarum NRC-34001
Pathway
hanr03030
DNA replication
hanr03420
Nucleotide excision repair
hanr03430
Mismatch repair
hanr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hanr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LJ422_00620
03420 Nucleotide excision repair
LJ422_00620
03430 Mismatch repair
LJ422_00620
03440 Homologous recombination
LJ422_00620
03460 Fanconi anemia pathway
LJ422_00620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hanr03000
]
LJ422_00620
03032 DNA replication proteins [BR:
hanr03032
]
LJ422_00620
03400 DNA repair and recombination proteins [BR:
hanr03400
]
LJ422_00620
Transcription factors [BR:
hanr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
LJ422_00620
DNA replication proteins [BR:
hanr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
LJ422_00620
DNA repair and recombination proteins [BR:
hanr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
LJ422_00620
MMR (mismatch excision repair)
LJ422_00620
DSBR (double strand breaks repair)
HR (homologous recombination)
LJ422_00620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
REPA_OB_2
CDC24_OB3
Ssb-like_OB
SSB
POT1PC
DUF4131
DUF5666
Motif
Other DBs
NCBI-ProteinID:
UEB92173
LinkDB
All DBs
Position
112412..113836
Genome browser
AA seq
474 aa
AA seq
DB search
MGAIEDVYADLDTDVSIEEFREAVESKVEQMGGLADEETAAMLIAHEIDDGEVNGVADID
SEMDEVKFIAKVTRVGDVRTFDREDADDDDAAAEGRVVNVTVADETDDVRVSLWDEQATA
AADDLAPGDVLRIKGRPTDGYNGLEVSADEVELDADEQIDVQIQDEYDAADLSLGVSDVT
LVGEVLDTEAVRTFDRDDGSEGRVSNLVVGDETGRVRVTLWDDQADTATDLDAGAVVEIV
DGYVREREGSLELHVGDTGAVTPVPDADVSFVPDTTSIDSLEQDDTADIAGVVRSVDPTR
TFDRDDGSEGQVRNVRLQDDTGDIRVALWGEKADLDIGPGDEVAALDVEIQDGWQDDIEA
SAGWQASVIPLSDSTQDDAAAGSDGPDRGLAAFGADSDDEPAATDDAADTQTPHSDTPVE
FTGVVVQAQDPLILDDGEETMSVTTDADVTLGQEVTVRGSLDDGRLHADDVTES
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgattgaggacgtgtacgctgacctcgacaccgacgtgtctatcgaggagttc
cgggaggccgtcgagtcgaaggtcgaacagatgggggggctcgccgacgaggagacggcg
gcgatgctcatcgcccacgagatcgacgacggcgaggtgaacggcgtcgcggacatcgac
tccgagatggacgaggtgaagttcatcgcgaaagtcacccgcgtgggtgacgtccgcacg
ttcgaccgcgaggacgccgacgacgacgatgcggccgccgaggggcgggtggtgaacgtc
acggtggccgacgaaacggacgacgtccgggtctcgctgtgggacgaacaggccaccgcg
gccgccgacgacctcgcccccggggacgtgctccgcatcaaggggcggccgacggacggc
tacaacggcctggaggtcagcgccgacgaggtcgaactcgacgccgacgagcagatcgac
gtccagatccaggacgaatacgacgccgccgacctctcgttgggggtttcggacgtgacc
ctcgtcggggaggtcctggacaccgaggccgtccggacgttcgaccgtgacgacggcagc
gagggtcgtgtgtcgaatctcgtggtgggcgacgagaccggccgagtgcgagtgaccctg
tgggacgaccaggccgacaccgcgacggatctcgacgccggggccgtcgtcgagatcgtg
gacggatacgtccgcgagcgggagggcagcctcgaactccacgtcggggacaccggcgcg
gtcacgccggtcccggacgccgacgtgtcgttcgttccggacaccacgtccatcgacagc
ctcgaacaggacgacaccgcggacatcgcgggcgtcgttcggtcggtcgaccccacgcgc
acgttcgaccgcgacgacggcagcgagggccaggtacgcaacgtccgcctgcaggacgac
accggcgacattcgggttgcgttgtggggcgagaaggcggatctggacatcggcccgggt
gacgaagtggcggccctcgacgtggagatccaggacggctggcaggacgacatcgaggcg
tcggccggctggcaggcgtcggtgatcccgctgtcggacagcacccaggacgacgccgcc
gccggcagcgacggccccgaccgcgggctggcggcgttcggtgccgacagcgacgacgag
cccgccgccaccgacgacgcggccgacacacagactccacacagcgacacgcccgtggag
ttcaccggcgtcgtcgtgcaggcccaggacccgctgattctggacgacggcgaggagacg
atgagtgtcaccaccgacgccgacgtgactctcggccaggaggtcaccgtccgcggctcg
ctcgacgacggccggctacacgccgacgacgtcacggagtcgtga
DBGET
integrated database retrieval system
