Halobacterium salinarum NRC-34001: LJ422_01375
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Entry
LJ422_01375 CDS
T07949
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
hanr
Halobacterium salinarum NRC-34001
Pathway
hanr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hanr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LJ422_01375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hanr03021
]
LJ422_01375
Transcription machinery [BR:
hanr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
LJ422_01375
Prokaryotic type
Archaeal type
TFB
LJ422_01375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Sigma70_r4
Cas12f1-like_TNB
Zn_ribbon_RPB9
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UEB92316
LinkDB
All DBs
Position
complement(248651..249610)
Genome browser
AA seq
319 aa
AA seq
DB search
MTDARMRSREQERTDETESESTDGCPECGGLVVNDEEHGESVCADCGLVVEEDGIDRGPE
WRAFDSKEKDEKSRVGAPTTNTMHDKGLSTNIDWRDKDAYGNSLSSNQRQKMQRLRKWNE
RFRTRDAKERNLKQALGEIDRMASALGLPDNVRETASVIYRRALEDDLLPGRSIEGVATS
CVYAAARQAGVPRSLDEIADVSRVEKAEIARTYRYVVRELGLEVAPADPESYVPRFASDL
GLSDEASHRARELLKTAKDKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAKVSEVADISE
VTIRNRYHELLEAEDTIPV
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgacagacgcacgaatgcgttcccgagagcaggagcgcacggacgagacggaatcggaa
tcgacggacggctgcccagagtgcggtggcctcgtggtcaacgacgaggagcacggcgag
tcggtgtgtgccgactgtgggctggtcgtcgaggaggacggcatcgaccgcggccccgag
tggcgcgcgttcgactccaaggagaaagacgagaaatcccgcgtcggtgccccgaccacg
aacacgatgcacgacaaggggctgtccacgaacatcgactggcgggacaaggacgcctac
gggaacagtctctccagcaaccagcgccagaagatgcagcgcctgcgcaagtggaacgag
cgcttccgcacccgagacgccaaagagcgcaacctcaagcaggcgctcggcgagatcgac
cggatggcctccgcgctcgggctgccggacaacgtccgggagaccgcctcggtgatctac
cgccgcgcgcttgaggacgacctgctgcccgggcgctccatcgagggcgtcgccacgtcc
tgcgtgtacgccgccgcgcgccaggccggcgttccccgcagcctcgacgagatcgccgac
gtgtcccgcgtcgagaaggcggagatcgcgcgcacgtaccgctacgtcgtccgcgagctc
ggcctggaggtcgcgcccgccgaccccgagagctacgtgccgcggttcgcaagcgacctc
gggctcagcgacgaggcctcccaccgcgcccgcgagctcctgaagacggccaaagacaag
ggcgtccactccggcaagtcgccggtcgggctcgcggccgcagcggtgtacgccgcggcg
ctgctgacgaacgagaagacgacgcaggcgaaagtctcggaggtcgcggacatctccgag
gtcaccatccgcaaccgctaccacgagctgctggaggccgaagacactattccggtgtag
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