Halobacterium salinarum NRC-34001: LJ422_06730
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Entry
LJ422_06730 CDS
T07949
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hanr
Halobacterium salinarum NRC-34001
Pathway
hanr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hanr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
LJ422_06730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hanr03019
]
LJ422_06730
03009 Ribosome biogenesis [BR:
hanr03009
]
LJ422_06730
04131 Membrane trafficking [BR:
hanr04131
]
LJ422_06730
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hanr04147
]
LJ422_06730
Messenger RNA biogenesis [BR:
hanr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
LJ422_06730
Ribosome biogenesis [BR:
hanr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
LJ422_06730
Membrane trafficking [BR:
hanr04131
]
SNARE
SNARE associated proteins
Others
LJ422_06730
Autophagy
Aggrephagy
Other aggrephagy associated proteins
LJ422_06730
Exosome [BR:
hanr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
LJ422_06730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
CDC48_2
AAA_16
RuvB_N
AAA_5
TIP49
AAA_22
AAA_2
AAA_33
AAA_14
nSTAND3
NPHP3_N
RNA_helicase
IstB_IS21
AAA_28
Mg_chelatase
AAA_7
AAA_18
AAA_3
ABC_tran
Sigma54_activat
AAA_17
DUF815
ATPase
Parvo_NS1
NB-ARC
AAA_24
AAA_30
TsaE
AAA_11
AAA_lid_PRS2_C
PhoH
SLFN-g3_helicase
KAP_NTPase
NACHT
Zeta_toxin
Vps4_C
IPT
OrgA_MxiK
Motif
Other DBs
NCBI-ProteinID:
UEB91268
LinkDB
All DBs
Position
1243721..1245949
Genome browser
AA seq
742 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGAETTAAKVWRADRQDWN
TDTIRIDGFTRQNAEVGIGERVKIRKADAEKADTLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVARDIVPVMSSTNHPFMRSPGQAIPLIAVETEPEGVCLVTEDTDVELREEPISGFE
RTGGGITYEDIGGLENEIQRVREMVELPMKHPQIFQKLGIEPPQGVLLHGPPGTGKTLLA
KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLEGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEI
GREEILKIHTRGMPLSDDVNLSTLADDTHGFVGADIESLSKEAAMRALRRYLPEIDLDEE
DIPPSLIDRMIVKREDFKGALSEVEPSAMREVLVELPKITWDDVGGLTEAKNNVKESVEW
PLNQPEKFTRMGVEPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVAPTVIFFDELDSLAPGRGQTGGNNVSERVVNQLLTELDGLEEMEEV
MVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILKIHTQDTPLAADVSLRELAE
RADGYVGSDLANIAREAAIEALRDDEDADDVGMAHFRAAMENVRPTITDDLMEYYDQVED
QFKGSQGPNVNSRQGSEHIGFQ
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagtccaactggaggtcgcgaaagcctaccccaacgattcgggacgggggatc
gcgcgcctcgatccagacacgctgttgcatctcaaactcagcccgggagacatcatcgaa
atcgagggggccgaaaccacggccgcgaaggtctggcgagccgaccgccaagactggaac
acggacaccatccggatcgacgggttcacgcgccagaacgccgaggtcggcatcggggag
cgcgtgaagatccggaaagccgacgcggaaaaagcggacacgctcgtcctcgcacccccc
gaggaagcgagcgtgcagttcggcagtgacgccgccggcatggtcaaacgccagatcctc
aagcggccggtcgtcgcccgcgacatcgttcccgtgatgtcctcgacgaaccacccgttc
atgcgatccccaggccaggcgatcccattgatcgccgtcgaaacggagcctgagggcgtc
tgcctggtgaccgaggacaccgacgtcgagctgcgcgaggagccgatcagcggcttcgag
cgcaccggcggcggcatcacgtacgaggacatcggcggcctcgaaaacgagattcagcgc
gtccgggagatggtcgaactcccgatgaaacacccccagatcttccagaagctcggcatc
gaaccgccacagggggtgttgctgcacgggccgccgggcaccgggaagaccctgctggcg
aaagccgtcgccaacgagacgtcggcgagtttcttctcgatcgccggtcccgagatcatc
tcgaagtattacggcgaatccgagcagcagctccgggagatcttcgaggacgccaaagac
gactcgccgtcgatcatcttcatcgacgagctggactccatcgcgcccaagcgcgaggac
gtcaccggcgaggtcgagcgccgtgtggtcgcccagctgttgacgatgatggacggcctg
gagggccgcgggcaggtcatcgtcatcgcggcgaccaaccgcgtcgacgccgtcgacccc
gcgctgcggcggccggggcgtttcgaccgcgagatcgagatcggcgtccccgacgagatc
gggcgcgaggagatcctgaagatccacacccgggggatgccgctgtccgacgacgtgaac
ctctcgacgctggccgacgacacccacgggttcgtcggcgcggacatcgagagcctcagc
aaggaggccgcgatgcgggcgctgcgccggtacctcccggagatcgatctcgacgaggag
gacatcccgccgagcctgatcgaccgcatgatcgtcaagcgcgaggacttcaagggcgcg
ctcagcgaggtggagccgtccgcgatgcgggaggtcctcgtggagctgccgaagatcacg
tgggacgacgtcggcgggctcacggaggcgaaaaacaacgtcaaggagtccgttgagtgg
ccgctgaaccagcccgagaagttcacgcggatgggcgtcgagccgcccgccggcgtgttg
ctgtacgggccgccgggcaccgggaagacgctgatggcgaaggccgtcgccaacgagacg
aacgccaacttcatctcggtgcgggggccacagctgctgtcgaagtgggtcggcgaaagc
gagaaggcgatccgccagacgttccggaaggcccgccaggtcgcgccgaccgtgatcttc
ttcgacgagctggacagcctcgcgcccggccgcgggcagaccggcgggaacaacgtcagc
gagcgcgtcgtcaaccagctgttgaccgagctggacggcctcgaggagatggaggaagtg
atggtgatcgcggcgaccaaccgcccggacatcatcgacccggcgttgatccgcagcggg
cgcttcgaccgcctcgtacaggtcggccagccggggatcgagggccgcgagcagatcctg
aagatccacacccaggacacgccgctggcggcggacgtctcgcttcgggagctcgccgag
cgcgcggacggctacgtgggcagcgacctcgcgaacatcgcccgggaggcagccatcgag
gcgctccgggacgacgaggacgccgacgacgtcggcatggcgcatttccgggcggccatg
gagaacgtccggccgacgatcaccgacgacctcatggagtattacgaccaggtcgaagac
cagttcaagggcagccagggccccaacgtgaacagccgccagggcagcgagcacatcggc
ttccagtag
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