Halobacterium salinarum NRC-34001: LJ422_08765
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Entry
LJ422_08765 CDS
T07949
Name
(GenBank) DEAD/DEAH box helicase
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
hanr
Halobacterium salinarum NRC-34001
Brite
KEGG Orthology (KO) [BR:
hanr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hanr03019
]
LJ422_08765
Messenger RNA biogenesis [BR:
hanr03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
LJ422_08765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
UEB91663
LinkDB
All DBs
Position
1606257..1608311
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AA seq
684 aa
AA seq
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MSEQVQRVDTLFLHETGDDYLAVANRDGDRLFRAKLEVAEKSAGPRPARFRRKTDGGEEP
RNPEEFVEIARRAGRIRISQQTTAAGREEVQAMLDAYQLAAKVVRTCRYCAGRGRYSPLT
AETAIEADGEFICRDCAVEELERELSFSGAVSGAAQDRLEELLFAEQDLEKVTGLLGGEL
DPDLTKYDEVSATTDDVDPVAVSELDLHPDVQGLFEDRFEELLPVQSLAVENGLVEGDDQ
MVVSATATGKTLVGEIAGLHRLQSGNGKLLFLVPLVALANQKHEDFQDEYGHLANVTIRV
GSSRIRDDGHAFDPAADIIVGTYEGIDHALRTGRDLGDIGTVVIDEVHTLKEDDRGHRLD
GLISRLKYYCEQRREERAGYDGAQWVYLSATVGNPGELAGKLRANLVEFEERPVPIERHV
TFADGAEKPDIENTLVRREFDQESSMGYRGQTIIFTNSRRRCNEISRKLDYPSRPYHAGL
DYGERKSVERQFGDQDLAAVVTTAALAAGVDFPANQVIFDTLAMGIEWLSVQEFEQMLGR
AGRPDYHDRGKVYVLVEPDASYHSSMEGTEEEIAFTLLKGDMENVVTHYDEDAAVEETLA
NVTVGGTAAKRLNDRMVGDIPTKHALGKLLEYEFIDGLEPTDRGRAVTTHFLDPDSAFRI
LDGVRKGHAPGRIIATLELREDDQ
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgagcaggtccagcgcgtggacacgttgttcctccacgagacgggcgacgactac
ctcgcggtggccaaccgcgacggggaccggctgttccgcgcgaaactagaggtcgcggag
aagagcgccgggccccgtccggcccggttccggcggaagaccgacggcggcgaggagcca
cgcaaccccgaggagttcgtggagatcgcgcgccgcgccggccgcatccgcatcagccag
cagacgacggccgcgggccgcgaggaggtccaggccatgctggacgcctaccagctcgcc
gcgaaggtggtgcggacgtgtcggtactgcgcgggccgcgggcggtactccccgctcacc
gcggagaccgccatcgaggccgacggcgagttcatctgccgggactgcgcggtcgaggag
ctggagcgcgagctctccttttcgggggcggtgtcgggggccgcacaggaccgcctcgaa
gagctgctgttcgccgagcaggacctcgaaaaggtcaccgggctgctgggtggcgagctc
gaccccgacctgacgaaatacgacgaagtgtcggcgaccaccgacgacgtcgaccccgtg
gccgtctcggagttggacctgcatccggacgtccaggggctcttcgaggaccgcttcgag
gaactgctgcccgtccagagtctcgccgtcgagaacgggctcgtcgagggtgacgaccag
atggtggtgtcggcgacggcgaccgggaagacgctggtcggcgagatcgcgggcctccac
cggctgcagtccggcaacggcaagctgctgtttctcgtcccgctggtggcgctggccaac
cagaaacacgaggacttccaggacgaatacggccacctcgcgaacgtcaccatccgcgtg
gggtcctcgcggatccgggacgacggccacgccttcgaccccgccgcggacatcatcgtc
ggcacctacgagggcatcgaccacgcgctgcggacggggcgcgacctgggcgacatcggc
acggtcgtcatcgacgaggtgcacacgctcaaggaggacgaccgcggccaccgcctcgac
ggcctcatctcgcggctgaaatactactgcgagcagcgccgcgaagagcgcgcgggctac
gacggcgcccagtgggtgtatctctccgcgaccgtcggcaaccccggcgagctggcgggg
aagctgcgcgcgaacctcgtggagttcgaggagcgccccgtgcccatcgagcgccacgtc
acgttcgccgacggcgccgagaagcccgacatcgagaacacgctcgtccgccgtgagttc
gaccaggagtcctcgatggggtaccgcgggcagaccatcatcttcaccaactcgcggcgg
cgctgcaacgagatctcgcgcaaactcgactacccctcgcggccgtaccacgccggcctc
gactacggcgaacgcaaatccgtcgagcgacagttcggcgaccaggacctcgcggccgtc
gtgacgacggcggcgctcgcggcgggcgtcgacttccccgccaaccaggtcatcttcgac
acgctggcgatgggcatcgaatggctctccgtccaggagttcgagcagatgctcggccgc
gccggccgtcccgactaccacgaccgcgggaaggtgtacgtgctcgtcgaacccgacgcg
tcgtatcactcctcgatggagggcaccgaggaggaaatcgcgttcacgctcctgaaaggc
gacatggagaacgtggtcacgcattacgacgaggacgccgccgtcgaggagacgctggcg
aacgtcaccgtcggcggcacggccgccaaacgcctcaacgaccgcatggtcggggacatc
cccacgaaacacgccctggggaagctactggagtacgagttcatcgacggcctggagccg
acggaccgcgggcgcgcggtcaccacgcacttcctggatccggacagcgcgttccgcatc
ctcgacggcgtgcgcaagggccacgcgcccggccgcatcatcgcgaccctggaactccgc
gaggacgaccagtag
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