Halobacterium salinarum NRC-34001: LJ422_11640
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Entry
LJ422_11640 CDS
T07949
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
hanr
Halobacterium salinarum NRC-34001
Brite
KEGG Orthology (KO) [BR:
hanr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hanr03400
]
LJ422_11640
Enzymes [BR:
hanr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LJ422_11640
DNA repair and recombination proteins [BR:
hanr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LJ422_11640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
AAA_16
DEAD
Motif
Other DBs
NCBI-ProteinID:
UEB93170
LinkDB
All DBs
Position
pHcu_235:complement(164234..167869)
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AA seq
1211 aa
AA seq
DB search
MTEDPEEIQLTEEQEDALVQGRNVAITAGAGTGKTTTLTERYVTILAENPSLTPENIITI
TFTRKAAAELTERVREEVYDRLEAVDSPEAYNRWRNVLDDLEDGYVHTIHAFCARLLRER
AVEAPVPLGFDVLDEDGAATLQREVVTEFLERNQDDDDVALLAQLWGRDQLVDVLAGLLD
ERPQSESVLEAWRDADVDDYVDICWEVVCDLDVADARQTLYADGLLEQLRTVAGRVDREG
AIADEDGLRAYRTLTKVATTLPDDPQESDPRDCQRAILELYEACEKKNGGLYSSSGYVVG
DRDDWGEHGDVYDDLKDTIDAVIAAVEPHADAVETTPGELEANSAHYALALMRAFDDVLA
AYTAEKDRRDTLDFPDVIETTLEFLRANDAVTERLREQFAAVMVDEFQDTDPRQWELVKL
LTGVDEGTASNVFLVGDEKQSIYGFRGADVTTFGNARRELQTVNEARGVDDVPDGEAESP
TALELSGNFRTLDEPLSFLNELFEYLLQPEGDTHEPYEAPPQELTTQRDRIEDIEGLTGS
VEYLAVPDDADTAAELFGDDHPVAEGALDHTIEAEAQALAARLTHLFDDPPQVQDPDTGV
HREATPDDTAILLRRRTHLDRYQRALEEYDIPYTVVGGVGFYDTPEVQALTNLLRVLGDP
EDDVSLYGVLRSPLFGFADDRLAPAVAEADSVWDALAETDDPQLADAFDLLSTWRTLSGC
AAPSENGVLPWNRLLSRVIDDTGYLASVSADERGRQAIANVEKFRDQVRTWSENGVHTAA
GLLHRIDRQAEIDPREGEADIPGDAEGVRIMTIHSAKGLEFPIVTVPDLGSDLNFGRSVD
DHGYVRLVDGTDDAPPVPAVGGPDPGDAFSIEKTAVHEYADRQSRPQERAESKRLLYVAC
TRTRDHLLLCGTHDIDVDESGAIELGEPAAFDDADRWRDWVQPALLDGALVAEAIRDGQA
RGEMDEASYTVRRPPRPVDWHTDDDAVDPALEISIPSPPSLAPAKRIAATTLVNAVADAS
TDGHSYSQREESAGLSPTTFGTVVHRINELRPPRDEWSTLIHRLSRMTGEVPTEADVREA
VDHAADAVEFVDHIESGSQLQEVHDEYSVVARIDESRIAGYIDRLLVMPDAFHIIDYKTN
DLSATTSDELADHYRPQMLAYALALLQHDQTRDVRASLRFTDEGVEERFNWDSEQMTEIE
SELRSMVDLVD
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgactgaggaccccgaagagattcagctcacggaggaacaggaggacgcgctcgtccag
ggccggaacgtcgcgatcactgccggtgctgggacggggaagacgacaacgctcaccgag
cgctacgtgacgatcctggccgaaaacccgtcgctcacgcccgaaaacatcatcacgatc
accttcacgcgaaaggcggctgccgaactgaccgagcgcgttcgggaggaggtgtacgat
cggctcgaggctgtcgactcaccagaggcctacaaccgctggcgtaacgtccttgacgac
ctggaggacggttacgtccacaccattcacgcgttctgtgcccggctcttgcgagaacga
gccgtcgaggctccggtgccgctcggcttcgacgtgctcgacgaagacggcgctgcgaca
ctccagcgcgaagtcgtgacggagttcctcgaacgcaatcaggacgatgacgatgttgcg
ctccttgcccagctctggggtcgcgaccagttggtcgatgtactcgctggattactcgat
gagcgcccccagagcgagtccgtcctcgaggcgtggcgtgacgccgatgtcgacgactac
gtcgatatctgctgggaggtcgtctgcgatctcgacgttgccgacgctcgacagacgctg
tatgcggacggactccttgaacagctacgcacggttgcgggccgcgtcgaccgcgagggc
gctatcgccgacgaggacggccttcgggcctaccggaccctcaccaaggtcgcgacgaca
ctccctgacgacccccaggaaagcgacccccgcgactgtcagcgggcaatcctcgagctg
tacgaggcctgtgagaagaagaacggcggcctgtacagcagttcggggtacgtcgtcggt
gaccgggacgactggggtgagcacggtgatgtctacgacgatctaaaggacaccatcgac
gcggtcatcgcggccgtcgaaccacacgcggatgcagtcgagacgacgccgggggaactg
gaagcgaatagcgcccactacgcgctcgccctgatgcgagccttcgacgatgtcctcgca
gcctacactgccgagaaggaccgccgcgacacgctcgactttcctgacgtgatcgagacg
acgctcgagttcttgcgagctaacgatgccgtcacggagcggctacgagagcagtttgcg
gccgtgatggtcgatgagttccaggacacggacccgcgccagtgggagttagtcaaactc
ctcacgggcgtcgacgaggggacggcgtcgaacgtcttcctggtcggcgacgagaaacag
agcatctacggattccgtggcgccgacgtgacgacgtttgggaatgcgcgcagagaactc
cagaccgtcaacgaagcccgcggtgtcgacgacgtccccgacggcgaggccgagagtccg
accgcactcgaactctccgggaacttccggacactggacgagccgctatcgttcctgaac
gagctcttcgagtacctgctccagccggaaggggatacgcacgaaccatacgaagcacca
ccgcaggagttgaccacgcagcgtgaccgtatcgaggacatcgagggactgactgggagc
gtcgagtatctcgctgttcccgacgacgctgacacggcggcagagctcttcggcgacgac
cacccggtcgccgaaggcgcgctcgaccacaccatcgaggccgaggcacaagcgctcgct
gctcgactgacccacctgttcgacgatccgccgcaagtccaagaccccgacacgggtgtt
catcgtgaggccaccccggacgacacggcaatcttgctccgccggcgaacccatcttgac
cggtatcagcgcgcccttgaggagtacgacattccctacactgtcgtcggtggcgtcggg
ttctacgatacgcctgaggtccaggcgctcacgaacttgcttcgagtactcggtgacccg
gaggatgacgtctccctctatggggtgcttcggtcaccgctgttcggattcgcggatgat
cgcctcgcaccggcggtcgcagaggccgattcagtgtgggatgcgctcgccgagacggac
gatccacagctcgcggacgcgttcgacctcctttcgacgtggcgcaccctcagtggctgt
gcggccccgtccgaaaacggtgtcctcccgtggaatcgcctgctgtcccgagtgatcgac
gataccgggtatctggcgagcgtgagtgctgacgaacgcggtcgacaggccatcgcgaac
gtcgagaagttccgtgaccaggtccgcacctggagtgagaacggggttcatactgctgcg
gggttgctccaccggatcgaccgccaagccgagatcgacccccgtgagggggaggcagat
attccgggtgacgccgagggcgttcggattatgacgatccattcagcgaagggactcgag
ttcccgatcgtcaccgtccccgatctcgggagtgacctcaacttcggtcgctccgtggac
gaccacgggtacgttcgactcgtggacggaactgatgatgcccccccggtgccagcggtc
ggtggaccggatccgggcgatgcgttctcgatcgagaagaccgccgtccacgagtacgct
gaccgacagtcccgtccacaggagcgggcggagtcgaagcggctcctctacgttgcgtgt
acacgaacacgggatcacctccttctctgcggcacacacgatatcgatgtcgacgagtcc
ggtgcaatcgaactgggggaacctgctgccttcgacgatgcagaccggtggcgcgactgg
gtacagccagctctcctcgatggagcactcgtcgccgaggcgattcgggatggacaggcc
cgtggcgagatggatgaggccagttataccgttcgcaggccgccgcgccctgttgattgg
cacaccgacgacgacgctgttgatccagcactggagatatcgattccgtcaccgccgtcg
ctagcgccggcgaaacggatcgcggccacgacgctcgtgaatgcggtggcagacgcgtct
acagacggtcacagttactctcagcgtgaggagtcggcgggcctgagccctacgacgttc
gggacggtcgtccaccggatcaacgaactccgaccgccgagagatgaatggtccaccctg
atccaccgtttgagtcggatgaccggtgaggtgccgacagaagcagacgtccgtgaagct
gtcgaccacgctgctgatgcagtcgaatttgtggaccacatcgaatccggttcccagctt
caggaagttcacgacgagtactccgttgtcgcccgaatcgatgagtcgcggattgccggt
tatatcgaccgcctgctcgttatgccggatgcctttcacattatcgactacaagaccaac
gatctctcggctacaacctcggatgagcttgcggatcactatcgaccgcagatgctcgcg
tacgctctcgcactcctccaacacgaccagactcgtgacgtacgagcctcactccggttc
actgacgaaggggtagaggaacggttcaattgggactcggagcagatgacggaaatcgaa
tctgaactacgatcgatggtggatctggtagattaa
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