Halobacterium sp. NMX12-1: ABSL23_10120
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Entry
ABSL23_10120 CDS
T10641
Symbol
ligA
Name
(GenBank) ATP-dependent DNA ligase LigA
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
hanx Halobacterium sp. NMX12-1
Pathway
hanx03030
DNA replication
hanx03410
Base excision repair
hanx03420
Nucleotide excision repair
hanx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hanx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABSL23_10120 (ligA)
03410 Base excision repair
ABSL23_10120 (ligA)
03420 Nucleotide excision repair
ABSL23_10120 (ligA)
03430 Mismatch repair
ABSL23_10120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hanx03032
]
ABSL23_10120 (ligA)
03400 DNA repair and recombination proteins [BR:
hanx03400
]
ABSL23_10120 (ligA)
Enzymes [BR:
hanx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ABSL23_10120 (ligA)
6.5.1.6 DNA ligase (ATP or NAD+)
ABSL23_10120 (ligA)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
ABSL23_10120 (ligA)
DNA replication proteins [BR:
hanx03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
ABSL23_10120 (ligA)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
ABSL23_10120 (ligA)
DNA repair and recombination proteins [BR:
hanx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
ABSL23_10120 (ligA)
NER (nucleotide excision repair)
Other NER factors
ABSL23_10120 (ligA)
MMR (mismatch excision repair)
Other MMR factors
ABSL23_10120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
EccE
Motif
Other DBs
NCBI-ProteinID:
XCF15598
UniProt:
A0AAU8CC01
LinkDB
All DBs
Position
complement(1613256..1614923)
Genome browser
AA seq
555 aa
AA seq
DB search
MEFGSFAAHAADIEATDADLDVVAKVAALFGEAGDDLAVVARFVQGRVFPAHSETKLDIG
PRLCYEALARAASTNVTVEDVEDRLAETGDIGEVAANLDLGGQAGLGAFAADSGDDDLTV
AEVYEDLTALAAAEGDGSQDEKVTLLFGLFNDCSGEEARYLARLVLGEMRIGVGEGAVRD
AIAEAFDVPVEGVQRALQVSNDYGLVAVTARDEGVEGLDELHLEVGRPVQAMLAQAGTVT
DALDEWEEAAVETKFDGARVQVHWDGDEVSLYSRNMEDVTDALPELVEFVEDHVEAPVIL
DGEAVAVDDDGSPLPFQEILKRFRRKHDVEQMRDEIRVELNAFDCLHAGGEDLLDEPFRE
RHRRLREVVDDDSAVSEILVTDDADEIAAFEERALEAGHEGIMLKDPEAAYTPGDRGKHW
LKRKPDVETLDLVVTGAEWGEGRRASFLGTFVLSARDEETGEYATIGKVATGITDEELAD
LTDLLEPHIRSEDGQEVDLEPAVVFEVGYEEIQTSPTYESGYALRFPRFVTVREDKPPEN
SDTIERVERLAEQQG
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggaattcggttcgttcgccgcgcacgccgccgacatcgaggcgacggacgcggacctc
gacgtcgtcgcgaaggtcgcggccctgttcggcgaggccggcgacgacctcgcggtggtc
gcgcggttcgtccaggggcgggtgttcccggcgcactcggagacgaaactcgacattggg
ccgcggctctgctacgaggcgctggcgcgcgcggcgtccacgaacgtcaccgtcgaggac
gtcgaggaccggctcgccgagacgggtgacatcggcgaggtcgctgcgaacctcgacctc
ggcggacaggcgggactgggcgcgttcgcggcggacagcggcgacgacgacctgaccgtc
gccgaggtgtacgaggacttgaccgcgctcgcagccgccgagggcgacggcagccaggac
gagaaagtcaccctcctcttcgggctgttcaacgactgctcgggcgaggaagcacgatac
ctcgcgcggctcgtgctcggggagatgcgcatcggcgtcggcgagggcgcggtccgggac
gcaatcgctgaggcgttcgacgtgcccgtggagggcgtccagcgcgcgctccaggtgtcg
aacgactacgggctcgtggcggtgacggcccgcgacgagggcgtcgagggcctcgacgag
ctacacctggaagtcgggcggcccgtgcaggcgatgctcgcgcaggccggcacggtcacc
gacgccctcgacgagtgggaggaggccgccgtggagacgaagttcgacggcgcgcgcgtc
caggtccactgggacggcgacgaggtgtcgctgtactcgcggaacatggaggacgtgacg
gacgcgctcccggagctcgtggagttcgtcgaggatcacgtcgaggcgcccgtcatcttg
gacggggaggcggttgcggtcgacgacgacgggagcccgctgccgttccaggagattctc
aagcgcttccgccgcaagcacgacgtcgagcagatgcgcgacgagattcgcgtcgaactg
aacgccttcgactgcctgcacgcgggcggggaggacctgctcgacgagccgttccgcgag
cgccaccggcgcctccgcgaggtggtggacgacgactcggcggtctccgagattctggtc
acggacgacgccgacgagattgcggccttcgaggagcgcgcgctcgaagccggccacgag
ggcatcatgctgaaagaccccgaggcggcgtacacgcccggcgaccgcgggaagcactgg
ctcaaacgcaagcccgacgtggagacgctggacctggtcgtgactggcgcggagtggggc
gagggccggcgcgcgtcgttcctcgggacgttcgtgctgtccgcgcgcgacgaggaaacc
ggcgagtacgcgactatcgggaaggtcgccaccggcatcaccgacgaggaactcgcggac
ctcacggacctcctggagccgcacatccgctcggaggacggccaggaagtggacctcgaa
cccgccgtcgtcttcgaggtcggctacgaggagattcagacgtcgccgacctacgagtcg
gggtacgcgctccggttcccgcggttcgtcaccgtccgcgaggacaagccgccggagaac
tccgacaccatcgagcgcgtcgaacgcctcgccgagcagcagggctga
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