Halobacterium sp. NMX12-1: ABSL23_10200
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Entry
ABSL23_10200 CDS
T10641
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
hanx Halobacterium sp. NMX12-1
Pathway
hanx03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hanx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
ABSL23_10200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hanx03021
]
ABSL23_10200
Transcription machinery [BR:
hanx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
ABSL23_10200
Prokaryotic type
Archaeal type
TFB
ABSL23_10200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Trm112p
Zn_ribbon_LysW
Zn_ribbon_tTFIIB
Cyclin_C
DUF7560
Sigma70_r4
Anti-TRAP
BRF2-like_C_cyclin_rpt
DZR
Zn_ribbon_PaaD
HypA
HTH_Tnp_ISL3
DUF8106
DUF8054_C
Zn_ribbon_FGT1_1
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
XCF15614
UniProt:
A0AAU8C9U3
LinkDB
All DBs
Position
1628094..1629077
Genome browser
AA seq
327 aa
AA seq
DB search
MSDNTRTRETREDAESESEDEREDADAELQCPECGGRLTVDEERGETVCEDCGLVVEEDS
IDRGPEWRAFGSEENDQKSRVGAPTTNLMHDKGLSTNIGWQDKDAYGNTLSGRQRQKMQR
LRKWNERFRTRTSKERNLKQALGEIERMASALGLPKNVRETASVIYRRALDEDLLPGRSI
EGVATSALYAAARQAGTPRSLDEVANVSRVERDEIARTYRYVARELGLEVAPTDPASYVP
RFCSDLGLSDEVERRARDLLESAEDAGLYSGKSPVGLAAAAVYAASLLVDERITQSQVSD
VANVSEVTIRNRYHEILEAGGETNVEA
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacaacacgcgaacccgcgaaacgcgcgaagacgccgagagcgagagcgaagac
gagcgcgaagacgcggacgccgagctccagtgcccggagtgcggcggtcgcctcaccgtc
gacgaggagcgcggggagaccgtctgcgaggactgcggcctcgtggtcgaggaggacagc
atcgaccgcggccccgagtggcgcgcgttcggcagcgaggagaacgaccagaagagccgc
gtcggtgcccccaccacgaatctgatgcacgacaaggggctgtcgacgaacatcggctgg
caggacaaggacgcctacggcaacaccctctccggccggcagcgacagaagatgcagcgc
ctccgcaagtggaacgagcgcttccgcacgcgaacctcgaaggagcgcaatctgaagcag
gcgctcggcgaaatcgagcggatggcctccgcgctcggcctcccgaagaacgtccgggag
actgcgtccgtgatttaccgccgcgcgctcgacgaggacctgctgcccggccgctccatc
gagggcgtcgccaccagcgcgctgtacgcggccgcccggcaggccggcaccccgcggagt
ctcgacgaggtggcgaacgtcagccgcgtcgagcgcgacgaaatcgcgcgcacctaccgg
tacgtcgcccgcgagctcggcctcgaagtcgcgccgaccgacccggccagctacgtcccg
cggttctgctcggacctcgggctctccgacgaggtcgagcgccgcgcccgcgacctcctg
gagagcgccgaggacgccggcctctactccgggaagtcgccggtcgggctcgcggccgcc
gcggtgtacgccgccagcctcctcgtggacgagcgcatcacgcagagccaggtcagcgac
gtcgcgaacgtcagcgaggtcaccatccgcaaccgctaccacgagattctggaagccggc
ggcgagacgaacgtcgaggcgtga
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integrated database retrieval system
