Halobacterium sp. NMX12-1: ABSL23_16660
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Entry
ABSL23_16660 CDS
T10641
Name
(GenBank) TATA-box-binding protein
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
hanx Halobacterium sp. NMX12-1
Pathway
hanx03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hanx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
ABSL23_16660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hanx03000
]
ABSL23_16660
03021 Transcription machinery [BR:
hanx03021
]
ABSL23_16660
Transcription factors [BR:
hanx03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
ABSL23_16660
Transcription machinery [BR:
hanx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
ABSL23_16660
RNA polymerase III system
TFIIIB
ABSL23_16660
RNA polymerase I system
SL1/TIF-1B
ABSL23_16660
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
Motif
Other DBs
NCBI-ProteinID:
XCF18143
LinkDB
All DBs
Position
pNMX12-1_211:complement(187182..187742)
Genome browser
AA seq
186 aa
AA seq
DB search
MSAPTETIHIENVVASSDIGQELSLDQLATDLDGAEYNPEDFPGVVYRLQEPKSATLIFR
SGKVVCTGAKSVDDVHDALDIVFDDLRELGIDVDSKPSIEVQNIVSSASLEQSLNLNAIA
IGLGLEQIEYEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGGTETDEAQQALTHVQDRLS
ELGLLD
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcacccacggagacgattcacatcgagaacgtcgttgcgtccagtgatatcggc
caagagctctccctcgaccagcttgccactgatctcgacggtgccgagtacaaccctgaa
gacttccctggggtcgtctaccgccttcaggagccgaagtcagccacgctaatcttccgc
tcggggaaagtcgtctgcaccggcgcgaaaagcgtcgacgacgtccacgacgccctcgac
atcgtcttcgatgacctccgcgagttaggcatcgacgtcgacagtaagccatcgatcgag
gtgcaaaacatcgtttcgagtgccagcctcgagcagtcgctgaacttgaacgcgatcgca
atcgggctcggcctagagcaaatcgagtacgagcccgaacagttccctgggctcgtctat
cggctcgatgaccccgacgtcgtcgtccttctctttggcagtgggaagctcgtcattact
ggtgggacagaaacggacgaggcccaacaggcgctcacgcacgtgcaggaccggctttcc
gaactcggactgctcgattaa
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integrated database retrieval system
